Phyre 2 alignment of P00393 with c1chuA

Job Description P00393
Confidence 99.59% Date Thu Jan 5 10:56:36 GMT 2012

Rank 113 Aligned Residues 327

% Identity 17% Template c1chuA_

PDB info PDB header:flavoenzyme Chain: A: PDB Molecule:protein (l-aspartate oxidase); PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence	M	T	T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	.	.	.	.	.	.	.	.	.	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence					.																								.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation					.																								.	.	.	.	.	.
Template Sequence	P	E	H	S	.	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	.	.	.	.	.	Q	V	I	V	L	S	K	G	P	V	T	E	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V	E	F	V	A	S	N	A
Template Known Secondary structure		S			.		S							S											T	T	T	S	.	.	.	.	.	.							S	S		T	T				S															T	T	T
Template Predicted Secondary structure					.																								.	.	.	.	.	.
Template SS confidence
	5	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.																.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Query SS confidence	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Query Sequence	.	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	.	.	.	.	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S
Query Conservation	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Alig confidence	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation
Template Sequence	R	S	C	V	Q	W	L	I	D	Q	G	V	L	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	T	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S
Template Known Secondary structure										T	T													T	T						S									G	G	G	T	T			S	S		B									T	T	T	T								S										G
Template Predicted Secondary structure
Template SS confidence
	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

	127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.
Template Sequence	K	V	Y	Q	Y	T	T	N	P	D	.	.	.	.	.	.	.	.	.	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N	L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	K	R	P	D	G	T	R	F	M	P
Template Known Secondary structure	G	G	S	S	S	B	S		G	G	.	.	.	.	.	.	.	.	.	G		S										T	T						T	T											S	T	T		T	T		B								T	T						T	T	S		B		G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Template SS confidence
	209	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																											.	.	.	.
Template Sequence	D	.	.	.	.	.	.	.	.	F	D	E	R	G	E	L	A	P	R	D	I	V	A	R	A	I	D	H	E	M	K	R	L	G	A	.	.	.	.	D	C	M	F	L	D	I	S	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G	L	G	I	D	L	T	Q	E	P	V	P	I	V
Template Known Secondary structure	G	.	.	.	.	.	.	.	.	T		T	T	G	G	G	S																	T		.	.	.	.	S								S	S		S																T	T	T			T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
	280									.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	.	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N
Query Conservation																																		.
Alig confidence																			.															.
Template Conservation																			.
Template Sequence	P	A	A	H	Y	T	C	G	G	V	M	V	D	D	H	G	R	T	.	D	V	E	G	L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R	M	H	D	I	S	T	L	P
Template Known Secondary structure							S							T	T		B		.	S	S	B	T					G	G	G				S	S	S	T	T	S			T	T																											B
Template Predicted Secondary structure																			.
Template SS confidence
	348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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