Job Description P55138 Confidence 100.00% Date Thu Jan 5 12:06:08 GMT 2012 Rank 11 Aligned Residues 443 % Identity 21% Template c2dpnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	G	I	D	G	G	S	Q	S	T	K	V	V	M	Y	D	L	E	G	N	V	V	C	E	G	K	G	L	L	Q	P	M	H	T	P	D	A	D	T	A	E	H	P	D	D	D	L	W	A	S	L	C	F	A	G	H	D	L	M	S	Q	F	A	G	N	K	E	D	I	V	G	I	G	L	G	S	I	R
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		F	L	L	A	L	D	Q	G	T	T	S	S	R	A	I	L	F	T	L	E	G	R	P	V	A	V	A	K	R	E	F	.	R	Q	L	Y	P	K	P	G	W	V	E	H	D	P	L	E	I	W	E	T	T	L	W	A	A	R	E	V	L	R	R	A	G	A	E	A	G	E	V	L	A	L	G	I	T	N	Q	R
Template Known Secondary structure										S	S									S	S	S											.			B		S	S	T	T																									T			T	T	T										S
Template Predicted Secondary structure																																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																																	.	.	.	.	.	.	.	.	.	120									.	.	.
Predicted Secondary structure									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		C	C	R	A	L	L	K	.	A	D	G	T	P	A	A	P	L	I	S	W	Q	D	A	R	V	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	E	H	T	N	P	D	V	A	.	.	.	.	.	.	.	.	Y	V	T
Query Conservation									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence									.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	T	L	L	W	D	R	K	T	G	K	P	L	H	N	A	I	V	W	Q	D	R	R	T	T	P	L	C	E	A	L	R	A	K	G	L	E	P	L	F	R	E	R	T	G	L	L	F	D	P	Y	F	S	G	T	K	L	V	W	L	L	E	N	V	P	G	L	K	A	R	A	E	G	G	G	V	A	F	G
Template Known Secondary structure		S							T	T	T	T			S	S					T	T														T	T							T	T	T	S			S		S	S	S												S	T	T					T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		S	F	S	G	Y	L	T	H	R	L	T	G	E	F	K	.	.	D	N	I	A	N	Y	F	G	Q	W	P	V	D	Y	K	S	W	A	W	S	E	D	A	A	V	M	D	K	F	N	I	P	R	H	M	L	F	D	V	Q	M	P	G	T	V	L	G	H	I	T	P	Q	A	A	L	A	T	H	F	P	A	G	L
Query Conservation																	.	.
Alig confidence																	.	.																							.	.																														.	.	.	.	.
Template Conservation																																									.	.																														.	.	.	.	.
Template Sequence		T	V	D	T	W	L	I	W	N	L	T	G	G	K	V	H	A	T	D	P	T	N	A	S	R	T	L	L	F	N	L	H	T	L	A	W	D	P	E	.	.	L	L	E	A	L	G	I	P	A	A	L	L	P	E	V	R	P	S	D	G	D	F	G	E	T	L	P	E	L	.	.	.	.	.	L	G	A	P	V
Template Known Secondary structure												T	T	T	S				B							T	S	T	T	B		S	S	S	S	S	B				.	.					T				T	T	S				B			T	T	S				B						.	.	.	.	.		S	S
Template Predicted Secondary structure																																									.	.																														.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																						.	.
Query SS confidence																																								.																						.	.
Query Sequence		P	V	V	C	T	T	S	D	K	P	V	E	A	L	G	A	G	L	L	D	D	E	T	A	V	I	S	L	G	T	Y	I	A	L	M	M	N	G	.	K	A	L	P	K	D	P	V	A	Y	W	P	I	M	S	S	I	P	Q	T	L	.	.	L	Y	E	G	Y	G	I	R	K	G	M	W	T	V	S	W	L	R
Query Conservation																																								.																						.	.
Alig confidence																																								.																						.	.
Template Conservation
Template Sequence		P	I	R	G	V	L	G	D	Q	Q	A	A	L	F	G	Q	A	A	L	G	G	G	E	G	K	C	T	Y	G	T	G	A	F	L	L	L	N	T	G	K	R	P	V	L	S	E	K	G	L	L	A	T	V	A	W	S	L	G	G	R	A	T	Y	A	L	E	G	S	L	F	V	A	G	A	A	V	G	W	L	K
Template Known Secondary structure		B															T	T			S	T	T							S	S	S									S	S					S	S	S										T	T											S		S	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		D	M	L	G	E	S	L	I	Q	D	A	R	A	Q	D	L	S	P	E	D	L	L	N	K	K	A	S	C	V	P	P	G	C	N	G	L	M	T	V	L	.	.	.	D	W	L	T	N	P	W	E	P	Y	K	R	G	I	M	I	G	F	D	S	S	M	D	Y	A	W	I	Y	R	S	I	L	E	S	V	A	L
Query Conservation																																										.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	G	L	I	R	E	S	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	A	A	S	V	E	D	T	G	D	V	Y	F	V	P	A	F	T	G	L	G	A	P	Y	W	D	P	Y	A	R	G	T	L	L	G	L	T	R	G	T	S	R	A	H	L	A	R	A	A	L	E	G	V	A	F
Template Known Secondary structure		T	T	T	S	S	S	S	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.				G	G	G		S	S		S	S							T	T				T	T	T			T	T										T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.													.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	K	N	N	Y	D	N	M	C	N	E	M	N	H	F	A	K	H	V	I	I	T	G	G	G	S	N	S	D	L	F	M	Q	I	F	A	D	V	F	N	L	P	A	R	R	N	A	I	N	G	C	A	S	L	G	A	A	I	N	T	A	V	G	L	G	L	Y	P	D	Y	A	T	A	V	D	N	M	V	R
Query Conservation
Alig confidence																																																																												.	.
Template Conservation																																																																												.	.
Template Sequence		Q	V	R	D	V	V	L	A	M	E	E	E	A	G	V	R	L	K	V	L	K	A	D	G	G	M	A	Q	N	R	L	F	L	K	I	Q	A	D	L	L	G	V	P	V	A	V	P	E	V	T	E	T	T	A	L	G	A	A	L	M	A	G	V	G	A	G	A	L	S	P	E	D	V	A	.	.	G	R	F	R
Template Known Secondary structure													S	S	S										S	G	G	G	G													T	S						S																	T	T	S			T					.	.	T	T
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.			.	.	.	460
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	D	I	F	I	P	I	E	S	N	A	K	R	Y	D	A	M	N	K	G	I	F	K	D	L	T	K	H	T	D	V	I	L	K	K
Query Conservation
Alig confidence															.							.
Template Conservation															.							.
Template Sequence		E	A	E	R	F	L	P	T	M	P	E	G	R	.	R	E	A	L	Y	R	.	R	W	R	E	A	V	E	R	A	K	G	W	A	R	E
Template Known Secondary structure										S					.							.								T	T	T	T		S
Template Predicted Secondary structure															.							.
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.