Job Description P55138 Confidence 98.68% Date Thu Jan 5 12:06:08 GMT 2012 Rank 36 Aligned Residues 275 % Identity 15% Template c1z6rC_ PDB info PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Resolution 2.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	G	I	D	G	G	S	Q	S	T	K	V	V	M	Y	D	L	E	G	N	V	V	C	E	G	K	G	L	L	Q	P	M	H	T	P	D	A	D	T	A	E	H	P	D	D	D	L	W	A	S	L	C	F	A	G	H	D	L	M	S	Q	F	A	G	N	K	E	D	I	V	G	I	G	L	G	S	I	R
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Y	L	S	L	R	I	S	R	G	E	I	F	L	A	L	R	D	L	S	S	K	L	V	V	E	E	S	Q	E	L	A	L	.	.	.	.	.	.	.	.	.	.	K	D	D	L	P	L	L	D	R	I	I	S	H	I	D	Q	F	F	I	R	H	Q	K	K	L	E	R	L	T	S	I	A	I	T	L	P	G
Template Known Secondary structure										T	T									T	T													S	.	.	.	.	.	.	.	.	.	.	S		S	S																	T	T	T	T												S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.											.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		C	C	R	A	L	L	K	A	D	G	T	P	A	A	P	.	.	.	L	I	S	W	Q	D	A	R	V	T	R	P	Y	E	H	T	N	P	D	V	A	Y	V	T	S	F	S	G	Y	L	T	H	R	L	T	G	E	F	K	D	N	I	A	N	Y	F	G	Q	W	P	V	D	Y	K	S	W	A	W	S	E	D	A
Query Conservation																	.	.	.
Alig confidence		.	.	.	.												.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	I	I	D	T	E	N	G	I	V	H	R	X	P	F	Y	E	D	V	K	E	X	P	L	G	E	A	L	E	Q	H	T	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.				T	T	T	T						S	S		T	T		S	S	B												S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence		A	V	M	D	K	F	N	I	P	R	H	M	L	F	D	V	Q	M	P	G	T	V	L	G	H	I	T	P	Q	A	A	L	A	T	H	F	P	A	G	L	P	V	V	C	T	T	S	D	K	P	V	E	.	.	.	.	A	L	G	A	G	L	L	D	D	E	T	A	V	I	S	L	G	T	Y	I	A	L	M	M
Query Conservation																																																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	Y	I	Q	H	D	I	S	A	W	T	X	A	E	A	L	F	G	A	S	R	G	A	R	D	V	I	Q	V	V	I	D	H	N	V	G	A	G	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	S	T	T	T	T		S	S							S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																										189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		238	.	240													.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	K	.	.	.	.	.	.	.	.	.	.	.	.	A	L	P	K	D	P	V	A	Y	W	P	I	M	S	S	I	P	Q	T	L	L	Y	E	G	Y	G	I	R	K	G	M	W	T	V	S	W	L	R	D	M	L	G	E	S	L	I	Q	D	A	R	A	Q	D	L	S	P	E	D	L	L	N	K	K	A	S
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																															.	.
Template Sequence		I	T	D	G	H	L	L	H	A	G	S	S	S	L	V	E	I	G	H	T	Q	V	D	P	Y	G	K	R	C	Y	C	G	N	H	G	C	L	E	T	I	A	S	V	D	S	.	.	I	L	E	L	A	Q	L	R	L	N	Q	S	X	S	S	X	L	H	G	Q	P	L	T	V	D	S	L	C	Q	A	A	L	R
Template Known Secondary structure				T	T			T	T	T	T	S	S			B		G	G	G	S	B	S		T	T	S		B		T	T	S	S	B	S	B	T					S				.	.											T		S	S		G	G	G	G	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		C	V	P	P	G	C	N	G	L	M	T	V	L	D	W	L	T	N	P	W	E	P	Y	K	R	G	I	M	I	G	F	D	S	S	M	D	Y	A	W	I	Y	R	S	I	L	E	S	V	A	L	T	L	K	N	N	Y	D	N	M	C	N	E	M	N	H	F	A	K	H	V	I	I	T	G	G	G	S	N	S	.
Query Conservation																																																																																	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.														.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	I	I	T	G	V	G	A	H	V	G	R	I	L	A	I	X	V	N	L	F	N	.	.	P	Q	K	I	L	I	G	S	P	L	S	K	A	A
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.		S						S	G	G	G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		307																				.	.	310	.																		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.
						385	.	.	.	.	390	.	.	.	.	.							.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.												.	.	.	.	.	.									.
Query SS confidence		.	.	.	.												.	.	.	.	.	.									.
Query Sequence		.	.	.	.	D	L	F	M	Q	I	F	A	D	V	F	.	.	.	.	.	.	N	L	P	A	R	R	N	A	.	I	N	G	C	A	S	L	G	A	A	I	N	T
Query Conservation		.	.	.	.												.	.	.	.	.	.									.
Alig confidence		.	.	.	.												.	.	.	.	.	.									.
Template Conservation
Template Sequence		D	I	L	F	P	V	I	S	D	S	I	R	Q	Q	A	L	P	A	Y	S	Q	H	I	S	V	E	S	T	Q	F	S	N	Q	G	T	X	A	G	A	A	L	V	K
Template Known Secondary structure																S						S	S							S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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