Job Description P55138 Confidence 88.16% Date Thu Jan 5 12:06:08 GMT 2012 Rank 132 Aligned Residues 322 % Identity 14% Template c1x3nA_ PDB info PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																								.																.	.	.	.	.
Query SS confidence																								.																.	.	.	.	.
Query Sequence		M	S	K	K	Y	I	I	G	I	D	G	G	S	Q	S	T	K	V	V	M	Y	D	.	L	E	G	N	V	V	C	E	G	K	G	L	L	Q	P	.	.	.	.	.	M	H	T	P	D	A	D	T	A	E	H	P	D	D	D	L	W	A	S	L	C	F	A	G	H	D	L	M	S	Q	F	A	G	N	K	E	D
Query Conservation																								.																.	.	.	.	.
Alig confidence					.	.																		.																.	.	.	.	.																																		.	.
Template Conservation					.	.																																																																								.	.
Template Sequence		F	P	V	.	.	V	L	V	I	N	C	G	S	S	S	I	K	F	S	V	L	D	V	A	T	C	D	V	L	M	A	G	I	A	D	G	M	N	T	E	N	A	F	L	S	I	N	G	D	K	P	I	N	L	A	H	S	N	Y	E	D	A	L	K	A	I	A	F	E	L	E	K	R	D	L	T	.	.	D	S
Template Known Secondary structure					.	.								S	S									T	T	T											S	T	T	S	S	S					S	T	T	S						S	S																T	T	T		T	.	.	T	T
Template Predicted Secondary structure					.	.																																																																								.	.
Template SS confidence
		4	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	I	G	L	G	S	I	R	C	C	R	A	L	L	K	A	D	G	T	P	A	A	P	L	I	S	W	Q	D	A	R	V	T	R	P	Y	E	H	T	N	P	D	V	A	Y	V	T	S	F	S	G	Y	L	T	H	R	L	T	G	E	F	K	D	N	I	A	N	Y	F	G	Q	W	P	V	D	Y	K	S
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.																										.																											.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.																										.																											.	.	.
Template Sequence		V	A	L	I	G	H	R	I	A	.	.	.	.	.	.	.	.	.	H	G	G	E	L	F	T	Q	S	V	I	I	T	D	E	I	I	D	N	I	R	R	V	S	P	.	L	A	P	L	H	N	Y	A	N	L	S	G	I	D	A	A	R	H	L	F	P	A	V	R	Q	V	.	.	.	A	V	F	D	T	S	F
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.			T	T	T		S	S																G	G	.	G	S																			T	T	S				.	.	.				T	T	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.																										.																											.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.										.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		W	A	W	S	E	D	A	A	V	M	D	K	F	N	I	P	R	H	M	L	F	D	.	.	V	Q	M	P	G	T	V	L	G	H	I	T	P	Q	A	A	L	A	T	H	F	P	A	G	L	P	V	V	C	T	T	S	D	K	P	V	E	A	L	G	A	G	L	L	D	D	E	T	A	V	I	S	L	G	T	Y
Query Conservation																								.	.
Alig confidence								.	.															.	.						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Q	T	L	A	P	.	.	E	A	Y	L	Y	G	L	P	W	E	Y	F	S	S	L	G	V	R	R	Y	G	.	F	H	G	T	S	H	R	Y	V	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	Y	E	L	L	D	L	D	E	K	D	S	G	L	I	V	A	H	L	G	N	G
Template Known Secondary structure		G	G	G				.	.						S	S							T	T							.	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T		B	T	T	B									S	S	S
Template Predicted Secondary structure								.	.																						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.																	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.									.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.																																																.
Query SS confidence															.	.	.	.	.	.	.	.																																																.
Query Sequence		I	A	L	M	M	N	G	K	A	L	P	K	D	.	.	.	.	.	.	.	.	P	V	A	Y	W	P	I	M	S	S	I	P	Q	T	L	L	Y	E	G	Y	G	I	R	K	G	M	W	T	V	S	W	L	R	D	M	L	G	E	S	L	I	Q	D	A	R	A	Q	.	D	L	S	P	E	D	L	L	N	K	K
Query Conservation															.	.	.	.	.	.	.	.																																																.
Alig confidence															.	.	.	.	.	.	.	.																					.																											.
Template Conservation																																											.
Template Sequence		A	S	I	C	A	V	R	N	G	Q	S	V	D	T	S	M	G	M	T	P	L	E	G	L	M	M	G	T	R	S	G	D	V	D	F	G	A	M	A	W	I	.	A	K	E	T	G	Q	T	L	S	D	L	E	R	V	V	N	K	E	S	G	L	L	G	I	S	G	L	S	S	D	L	R	V	L	E	K	A	W
Template Known Secondary structure									T	T						S			S	S	T	T	S	S	S			S	S				S										.					T													S								S	S		S
Template Predicted Secondary structure																																											.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	S	C	V	P	P	G	C	N	G	L	M	T	V	L	D	W	L	T	N	P	W	E	P	Y	K	R	G	I	M	I	G	F	D	S	S	M	D	Y	A	W	I	Y	R	S	I	L	E	S	V	A	L	T	L	K	N	N	Y	D	N	M	C	N	E	M	N	H	F	A	K	H	V	I	I	T	G	G	G	S	.
Query Conservation																																																																																	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.												.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		H	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	I	K	T	F	V	H	R	I	A	R	H	I	A	G	H	A	A	S	L	H	R	.	L	D	G	I	I	F	T	G	G	I	G	E
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T		S	S	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		287	.	.																				290	.	.	.																		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	D	L	F	M	Q	I	F	A	D	V	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	V	L	I	R	Q	L	V	I	E	H	L	G
Template Known Secondary structure													T	T	G
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions