Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6N4
Confidence23.58%DateThu Jan 5 11:03:35 GMT 2012
Rank64Aligned Residues109
% Identity14%Templatec3hslX_
PDB info PDB header:replicationChain: X: PDB Molecule:orf59; PDBTitle: the crystal structure of pf-8, the dna polymerase accessory subunit2 from kaposi's sarcoma-associated herpesvirus
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  NDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMN
Query Conservation   


 
  
  

    

     




 
 

 




 

   
 

 
 



   

    



 


  



Alig confidence 









..


























.....























....




...
Template Conservation 
 

 




.. 
    
 


 

 
  


 
 
  .....
        
     
 



 
 ....
 


...
Template Sequence  SATKTGVVQV. . HGSACTPTLSVLSSVGTAGVLGLRIKN. . . . . ALTPLVGHTEGSGDVSFSFRNTSV. . . . GSGFT. . .
Template Known Secondary structure  TT
..SSS
SSSSS.....

TT
SS
SSSB
T....T
S
B...
Template Predicted Secondary structure 

..









.....










....

...
Template SS confidence 















































































   28.30....... ..40.........50.........60.... .....70.........80........ .90...
 
   87..90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 




























Query SS confidence 






































































Query Sequence  NETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLS
Query Conservation   





 
    

     
 

  
 
       
 
 

  
 
 
 

 
  



     
 
 

Alig confidence  ........










......







........









......













Template Conservation  ........ 





  
 ...... 


 


........
 


  
 
...... 
  
 
 
 
 
 
Template Sequence  . . . . . . . . HTRELFGANVL. . . . . . DAGIAFYR. . . . . . . . PQFVRTTISY. . . . . . GDNLTSTVHKSVVD
Template Known Secondary structure  ........T
TT......
........

......SSTT


Template Predicted Secondary structure  ........


......
........

......






Template SS confidence 






































































   94.....100.... .....110.. .......120.. .......130......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions