Job Description P0A9S5 Confidence 100.00% Date Thu Jan 5 11:11:14 GMT 2012 Rank 16 Aligned Residues 326 % Identity 17% Template c3okfA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae Resolution 2.50 Å

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		1	.	.		.	.	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.
Predicted Secondary structure					.								.	.	.																																																									.	.	.
Query SS confidence					.								.	.	.																																																									.	.	.
Query Sequence		M	D	R	.	I	I	Q	S	P	G	K	.	.	.	Y	I	Q	G	A	D	V	I	N	R	L	G	E	Y	L	K	P	L	A	E	R	W	L	V	V	G	D	K	F	V	L	G	F	A	Q	S	T	V	E	K	S	F	K	D	A	G	L	V	V	E	I	A	P	F	G	G	.	.	.	E	C	S	Q	N	E	I
Query Conservation					.								.	.	.																																																									.	.	.
Alig confidence					.								.	.	.																																																									.	.	.
Template Conservation
Template Sequence		M	E	R	I	T	V	N	L	G	E	R	S	Y	P	I	S	I	G	A	G	L	F	A	N	P	A	L	L	S	L	S	A	K	Q	K	V	V	I	V	T	N	H	T	V	A	P	L	Y	A	P	A	I	I	S	L	L	D	H	I	G	C	Q	H	A	L	L	E	L	P	D	G	E	Q	Y	K	T	L	E	T	F
Template Known Secondary structure										G	G	G								T	T	G	G	G		G	G	G	G				T	T									T	T	T																T										S	S	G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																				.	.														.	.
Query SS confidence														.	.	.																				.	.														.	.
Query Sequence		D	R	L	R	G	I	A	E	T	A	Q	C	.	.	.	G	A	I	L	G	I	G	G	G	K	T	L	D	T	A	K	A	L	A	.	.	H	F	M	G	V	P	V	A	I	A	P	T	I	.	.	A	S	T	D	A	P	C	S	A	L	S	V	I	Y	T	D	E	G	E	F	D	R	Y	L	L	L	P	N	N
Query Conservation														.	.	.																				.	.														.	.
Alig confidence														.	.	.																				.	.														.	.																												.	.
Template Conservation																																																																																.	.
Template Sequence		N	T	V	M	S	F	L	L	E	H	N	Y	S	R	D	V	V	V	I	A	L	G	G	G	V	I	G	D	L	V	G	F	A	A	A	C	Y	Q	R	G	V	D	F	I	Q	I	P	T	T	L	L	S	Q	V	D	S	S	V	G	G	K	T	A	V	N	H	P	L	G	K	N	M	I	G	A	F	Y	Q	.	.
Template Known Secondary structure											T	T			T	T								S														G	G	G										S							T	S	S	S								T	T											.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	M	V	I	V	D	T	K	I	V	A	G	A	P	A	R	L	L	A	A	G	I	G	D	A	L	A	T	W	F	E	A	R	A	C	S	R	S	G	A	T	T	M	A	G	G	K	C	T	Q	A	A	L	A	L	A	E	L	C	Y	N	T	L	L	E	E	G	E	K	A	M	L	A	A	E	Q	H	V	V
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		P	K	A	V	V	I	D	T	D	C	L	T	T	L	P	A	R	E	F	A	A	G	M	A	E	V	I	K	Y	G	I	I	Y	D	S	A	F	F	D	.	.	.	.	.	.	.	.	.	.	.	.	W	L	E	A	Q	M	E	A	L	Y	A	L	D	E	Q	A	L	T	Y	A	I	A	R	C	C	Q	.	.	.
Template Known Secondary structure			S						G	G	G	G	G	G	S																			T							.	.	.	.	.	.	.	.	.	.	.	.											T	T															.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.													.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		T	P	A	L	E	R	V	I	E	A	N	T	Y	L	S	G	V	G	F	E	S	G	G	L	A	A	A	H	A	V	H	N	G	L	T	A	I	P	D	A	H	H	Y	Y	H	G	E	K	V	A	F	G	T	L	T	Q	L	V	L	E	N	A	.	.	.	.	P	V	E	E	I	E	T	V	A	A	L	S	H	A
Query Conservation																																																																.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																								.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	K	A	E	V	V	A	Q	D	E	K	G	I	R	A	L	L	N	L	G	H	T	F	G	H	A	I	E	A	H	M	G	Y	G	N	W	L	H	G	E	A	V	S	A	G	T	V	M	A	A	K	T	A	Q	L	Q	G	L	I	D	A	S	Q	F	E	R	I	L	A	I	L	K	K
Template Known Secondary structure		.	.	.	.	.	.	.													G	G	G	G	G	G	T	T													T	T	T	S																				T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.												.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	L	P	I	T	L	A	Q	L	D	I	K	E	D	V	P	A	K	M	R	I	V	A	E	A	A	C	A	E	G	E	T	I	H	N	M	P	G	G	.	.	.	.	.	.	.	.	.	.	.	A	T	P	D	Q	V	Y	A	A	L	L	V
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.					.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.					.	.	.
Template Sequence		A	H	L	P	V	R	T	P	E	.	N	M	T	F	.	.	.	A	D	F	M	Q	H	M	M	R	D	K	K	V	L	A	G	E	L	R	L	V	L	P	T	S	I	G	T	S	A	V	V	K	G	V	P	E	A	V	I	A	Q	A	I	E	Y
Template Known Secondary structure		T	T				S			T	.	T				.	.	.								T	G	G	G	T			T	T										T	T
Template Predicted Secondary structure											.					.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.		.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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