Job Description P39321 Confidence 18.66% Date Thu Jan 5 11:59:20 GMT 2012 Rank 8 Aligned Residues 59 % Identity 12% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		1201	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.					.	.	.	.	.	.	.	1240	.	.	.																						.	.	.	.	.	.	1250	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	Q	V	V	V	S	G	Y	V	L	P	G	L	Q	V	K	Y	G	V	G	I	F	D	S	I	A	T	L	T	L	R	.	.	.	.	Y	R	L	M	P	K	L	Y	L	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	G	V	D	Q	A	L	D	L	L	Y
Query Conservation																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	R	L	K	V	S	E	G	W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y
Template Known Secondary structure												T	T	S																										S	S	S	S													T	T															S	S	S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		1256	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	D	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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