Job Description P33940 Confidence 99.35% Date Thu Jan 5 11:52:57 GMT 2012 Rank 129 Aligned Residues 184 % Identity 11% Template d1kifa1 SCOP info Nucleotide-binding domain Nucleotide-binding domain D-aminoacid oxidase, N-terminal domain Resolution 2.60

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	.	.	.	.	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.									.										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	V	V	I	G	A	G	V	I	G	L	S	T	A	L	C	I	H	E	R	Y	H	S	V	L	Q	P	L	D	V	K	V	Y	A	D	.	R	F	T	P	F	T	T	T	D	.	.	V	A	A	G	L	W	Q	P	Y	T	S	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	P	Q	E
Template Known Secondary structure									S															T	T	T	S	S	S								S	.			T	T	S	S	S	G	G	.	.	G	S			B					S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	T
Template Predicted Secondary structure																																						.										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.															60	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G
Query Conservation
Alig confidence																			.	.																														.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																			.	.																														.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		A	N	W	N	Q	Q	T	F	N	Y	L	L	S	H	I	G	S	.	.	P	N	A	A	N	M	G	L	T	P	V	S	G	Y	N	L	F	R	E	A	V	P	D	P	Y	W	K	D	M	.	.	.	.	.	.	.	.	.	.	V	L	G	F	R	K	L	T	P	R	E	L	D	M	F	P	D	Y	R	.	.	.
Template Known Secondary structure														T	T	T	T	S	.	.	T	T	T	T	T	T	T											S	S						T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	S												T	T	S	T	T			.	.	.
Template Predicted Secondary structure																			.	.																														.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110											.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																											.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																											.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	G	W	F	N	T	S	L	I	L	E	G	R	K	Y	L	Q	W	L	T	E	R	L	T	E	R	.	G	V	K	F	F	L	R	K	.	V	E	S	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	A	R	G	G	A	D	V	I	I	N	C	T
Template Known Secondary structure		.	.	.	.	.	.	.	.																										T	.	T								.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																											.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.		.	.	.	.	.																		.	170	.	.	.	.	.	.	.	.	.	180	.	.
		269	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	A	A	L	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	W	A	G	V	L
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions