Job Description P33940 Confidence 99.35% Date Thu Jan 5 11:52:57 GMT 2012 Rank 130 Aligned Residues 185 % Identity 18% Template d1c0pa1 SCOP info Nucleotide-binding domain Nucleotide-binding domain D-aminoacid oxidase, N-terminal domain Resolution 1.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I
Query Conservation
Alig confidence																										.	.											.										.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																										.	.											.										.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		H	S	Q	K	R	V	V	V	L	G	S	G	V	I	G	L	S	S	A	L	I	L	A	R	.	.	K	G	Y	S	V	H	I	L	A	R	.	D	L	P	E	D	V	S	S	Q	.	.	T	F	A	S	P	W	A	G	A	N	W	T	P	F	M	T	L	T	D	G	.	.	.	.	.	.	.	.	.	P	R	Q
Template Known Secondary structure				S									S													.	.	T	T								S	.	S		T	T		T	T		T	.	.	T	S	S	G	G	G				B					S		T	T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.											.										.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		1002	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.			.	.	.	.	1030	.	.	.	.	.		.	.	.	.	1040	.	.	.	.			.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.										.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G
Query Conservation
Alig confidence																							.	.	.	.	.												.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.												.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		A	K	W	E	E	S	T	F	K	K	W	V	E	L	V	P	T	G	H	A	M	.	.	.	.	.	W	L	K	G	T	R	R	F	A	Q	N	.	.	.	.	.	.	.	.	.	E	D	G	L	L	G	H	W	Y	K	D	I	T	P	N	Y	R	P	L	P	S	S	E	C	P	P	G	.	.	.	.	.	.	.
Template Known Secondary structure																T	T	T	T	S	S		.	.	.	.	.										S	S	.	.	.	.	.	.	.	.	.	G	G	G	G	G	G	G	T	T	T	T	T	S	T	T						G	G	G	S	S	T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.												.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		1068	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.						.	1090	.	.	.	.	.	.	.	.	.										1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																												.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																												.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	I	G	V	T	Y	D	T	L	S	V	H	A	P	K	Y	C	Q	Y	L	A	R	E	L	Q	K	L	.	G	A	T	F	E	R	.	R	T	V	T	S	L	E	Q	A	F	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	L	V	V	N	A	T
Template Known Secondary structure		.	.	.	.	.	.	.																											T	.	T						.				S	B	G	G	G	T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.	.	.	.	.	.																												.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.		.	.	.	.	.	.		1160	.	.	.	.	.	.	.	.	.	1170	.																			.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	A	A	L	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	G	A	K	S	I
Template Known Secondary structure		G	G	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		1180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions