Job Description P33940 Confidence 99.78% Date Thu Jan 5 11:52:57 GMT 2012 Rank 32 Aligned Residues 255 % Identity 17% Template c3q9tB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins; PDBTitle: crystal structure analysis of formate oxidase Resolution 2.24 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.																				.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	E	E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	N	N	A	G	T	G	H	S	A	L
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		A	T	D	G	S	H	F	D	F	V	I	V	G	G	G	T	A	G	N	T	V	A	G	R	L	A	E	.	N	P	N	V	T	V	L	I	V	E	A	G	I	G	N	P	E	D	I	P	E	I	T	T	P	S	S	A	M	D	L	R	N	S	K	Y	D	W	A	Y	K	T	T	M	V	R	R	D	D	Y	E	R
Template Known Secondary structure				T	T									S		S											T	T	.	S	T	T	S							S	S		S		G	G	G						S	G	G	G	G	G	G	G	T	T	S	T	T	B											T	T
Template Predicted Secondary structure																													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	K	P	N	T	R	G	K	T	L	G	G	S	S	S	L	N	Y	F	T	W	V	P	G	H	K	A	T	F	D	Q	W	E	E	F	G	G	K	E	W	T	W	D	P	L	V	P	Y	L	R	K	S	A	T	Y	H	D	D	P	R	L	Y	S	P	E	L	E	K	I	G	G	G	G	P	I	P	I	S	H
Template Known Secondary structure									B		S	T	T	G	G	G	G	T	S														T	T						G	G	G	S										T	T						T	T			S		G	G	G	G	G	G			S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
			144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K
Query Conservation		.
Alig confidence		.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		A	E	L	I	D	E	M	A	P	F	R	E	N	L	T	K	A	W	K	S	M	G	Q	P	L	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	Y	D	G	E	M	D	G	L	T	H	C	C	D	T	I	Y	R	G	Q	.	.	.	R	S	G	S	F	L	F	V	K	N	K
Template Known Secondary structure						G	G	G													T	T	T			B		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S											S			T	T		.	.	.				G	G	G	G	S	S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																					.	.																														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D	.	.	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A	G	G	.	A	A	L	K	L	L	Q	E	S	G	I	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.																														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	I	T	I	V	P	E	V	H	S	K	R	L	I	I	N	E	A	D	R	T	C	K	G	V	T	V	V	T	A	A	G	N	E	L	N	F	F	A	D	R	E	V	I	L	S	Q	G	V	F	E	T	P	K	L	L	M	L	S	G	I	G	P	T	R	E	L	S	R	H	G	I	N	T	I	V	D	S	R
Template Known Secondary structure		T	T						S										T	T	T	T										T	T	S																											T	T										T	T				S				T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
				284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	A	K	D	Y	A	G	F	P	V	G	G	Q	F	L	V	S	E	N	P
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		H	V	G	Q	N	L	M	D	H	P	G	V	P	F	V	L	R	V	K	D	G
Template Known Secondary structure		T	T	T				B													T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions