Job Description P33940 Confidence 99.96% Date Thu Jan 5 11:52:57 GMT 2012 Rank 8 Aligned Residues 363 % Identity 18% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	S	E	E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K
Query Conservation
Alig confidence																															.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	A	A	T	R	C	D	D	I	A	I	I	G	G	G	I	V	S	A	L	T	A	L	A	L	Q	R	R	.	.	G	A	V	V	T	L	Y	C	A	D	A	Q	P	A	Q	G	A	S	G	.	.	N	R	Q	G	A	L	Y	P	L	L	N	G	K	.	.	.	.	.	.	.	.	.	.	.	N	D	A	L
Template Known Secondary structure						S			S	S							S												T	T	.	.	T								S	S	S	S	T	T		S	G	G	G	.	.		S										S	S	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																															.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.												.	320	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L
Query Conservation
Alig confidence																												.	.	.	.																								.	.	.	.																							.
Template Conservation																												.	.	.	.																								.	.	.	.																							.
Template Sequence		E	T	F	F	T	S	A	F	T	F	A	R	R	Q	Y	D	Q	L	L	E	Q	G	I	A	F	D	.	.	.	.	H	Q	W	C	G	V	S	Q	L	A	F	D	D	K	S	R	G	K	I	E	K	X	L	.	.	.	.	H	T	Q	W	P	V	E	F	A	E	A	X	S	R	E	Q	L	S	E	L	A	G	.
Template Known Secondary structure																						T	T					.	.	.	.												S											T	.	.	.	.	T	S				T	T	T														S	.
Template Predicted Secondary structure																												.	.	.	.																								.	.	.	.																							.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.					.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V
Query Conservation
Alig confidence		.	.	.	.	.	.																																	.																										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																	.																										.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	D	C	A	H	D	G	I	H	Y	P	A	G	G	W	L	C	P	S	D	L	T	H	A	L	X	X	L	A	Q	Q	N	.	G	X	T	C	H	Y	Q	H	E	L	Q	R	L	K	R	I	D	S	Q	W	Q	L	T	F	G	.	.	.	.	.	.	S	Q	A	A	K	H	H	A	T	V
Template Known Secondary structure		.	.	.	.	.	.	S			S	S						T	T																				T	.	T						S										S	S	S							.	.	.	.	.	.								S
Template Predicted Secondary structure		.	.	.	.	.	.																																	.																										.	.	.	.	.	.
Template SS confidence
								394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450							.	.	.	.	.	.	.	.	.	460
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	G	A	G	G	A	A	L	K	L	L	Q	E	S	G	I	P	E	A	K	D	Y	A	G	F	P	V	G	G	Q	F	L	V	S	E	N	P	D	V	V	N	H	H	L	A	K	V	Y	G	K	A	S	V	G	A	P	P	M	S	V	P	H	I	D	T	R	V	L	D	G	K	R	V	V	L	F	G	P	F
Query Conservation
Alig confidence																				.	.	.	.	.	.																									.	.	.	.																							.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.																									.	.	.	.																							.	.	.	.	.	.
Template Sequence		I	L	A	T	G	H	R	L	P	E	W	E	Q	T	H	H	L	P	.	.	.	.	.	.	L	S	A	V	R	G	Q	V	S	H	I	P	T	T	P	V	L	S	Q	L	Q	Q	V	L	.	.	.	.	C	Y	D	G	Y	L	T	P	V	N	P	A	N	Q	H	H	C	I	G	A	S	Y	.	.	.	.	.	.
Template Known Secondary structure						G	G	G	T	T		S	T	T	T	T	T	S		.	.	.	.	.	.															T	T	G	G	G			S			.	.	.	.		S	S	S						B	T	T	T	T									.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.																									.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.							480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.					.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.						410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence		A	T	F	S	T	K	F	L	K	N	G	S	L	W	D	L	M	S	S	T	T	T	S	N	V	M	P	M	M	H	V	G	L	D	N	F	D	L	V	K	Y	L	V	S	Q	V	M	L	S	E	E	D	R	F	E	A	L	K	E	Y	Y	P	Q	A	K	.	.	.	.	.	K	E	D	W	R	L	W	Q	A	G
Query Conservation																																																																			.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	Q	R	G	D	I	A	T	D	F	R	L	T	E	Q	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	E	R	L	L	R	C	L	P	Q	V	S	W	P	Q	Q	V	D	V	S	D	N	Q	A	R	C	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.			T	B													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T		S	G	G	G	G				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.																										.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.																.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	V	Q	I	I	K	R	D	A	E	K	G	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	L	G	T	E	V	V	S	D	Q	Q	G	T	I	A	A	L	L	G	A	S	P	G	A	S	T	A	A	P	I	M	L	N	L	L	E	K	V	F	G	D
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	C	A	I	R	D	H	L	P	X	V	G	A	V	P	D	Y	A	A	T	L	A	Q	Y	Q	D	L	S	R	R	I	N	D	I	A	V	A	P	V	W	P	E	L	F	X	V	G	G	L	G	S	R	G	L	C	S	A	P	L	V	A	E	I	L	A	A	Q	X	F	G	E
Template Known Secondary structure							T	T	S																	S	T	T																								T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.