Job Description P33940 Confidence 99.29% Date Thu Jan 5 11:52:57 GMT 2012 Rank 144 Aligned Residues 231 % Identity 10% Template c3ic9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. Resolution 2.15 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.												.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	.	.	.	.	.	.	.	.	.	.	.	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		N	V	D	V	A	I	I	G	T	G	T	A	G	X	G	A	Y	R	A	A	K	K	.	.	H	T	D	K	V	V	L	I	E	G	G	A	Y	G	T	T	C	A	R	V	G	C	X	P	S	K	L	L	I	A	A	A	D	A	S	Y	H	A	S	Q	T	D	L	F	G	I	Q	V	D	R	I	S	V	N	G	K
Template Known Secondary structure											S												T	.	.	T		S							S	S		S	S							S																		T		G	G	G	G	T				S
Template Predicted Secondary structure																								.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																							.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	I	E	K	A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	N	V	N	F	L	R	A	R	Y
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	X	K	R	I	Q	T	E	R	D	R	F	V	G	F	V	V	E	S	V	E	S	F	D	E	Q	D	K	I	R	G	F	A	K	F	L	D	E	H	T	L	Q	V	D	D	H	S	Q	V	I	A	K	R	I	V	I	A	T	G	S	R	P	N	Y	P	E	F	L	A	A	A	G	S	R	L	L	T	N	D
Template Known Secondary structure																									S		G	G	G				S							T	T					T	T	T																								T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		N	L	F	E	L	N	D	L	P	K	S	V	A	V	F	G	P	G	V	I	G	L	E	L	G	Q	A	L	S	R	.	.	.	L	G	V	I	V	K	V	F	G	R	S	G	S	V	A	N	L	Q	D	E	E	X	K	R	Y	A	E	K	T	F	N	E	E	F	Y	F	D	A	K	A	R	V	I	S	T	I	E
Template Known Secondary structure				T	T		S	S			S								S													.	.	.	T	T								S	S	S			T	T			S													T	T	S				T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	D	D	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A	G
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		K	E	D	A	.	.	.	V	E	V	I	Y	F	D	K	S	G	Q	K	T	T	E	S	F	Q	Y	V	L	A	A	T	G
Template Known Secondary structure			S	S	S	.	.	.								T	T	S								S						S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions