Return to main results Retrieve Phyre Job Id

Job DescriptionP33940
Confidence99.54%DateThu Jan 5 11:52:57 GMT 2012
Rank79Aligned Residues158
% Identity15%Templatec3cesB_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  SEEQETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAV
Query Conservation        








 


 
  


  

  
 



    
  

    


 

 
     
             
 
Alig confidence 


























..





























..................


Template Conservation       








 


 

  


 ..
 





      
   

 
 

   
 ..................
  
Template Sequence  FYPDPFDVIIIGGGHAGTEAAMAAARM. . GQQTLLLTHNIDTLGQMSCNPAIGGIGKGH. . . . . . . . . . . . . . . . . . LVK
Template Known Secondary structure 
SS

S

ST..T

S
GGGTT

SS
S
TT..................
Template Predicted Secondary structure 








..




















..................
Template SS confidence 















































































   2.......10.........20........ .30.........40.........50........ .60.
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  AINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVM
Query Conservation                 
                
 
  
        
                        
    
 
 
Alig confidence 






























.................................................
Template Conservation 
   
 
      
   
    
      
 .................................................
Template Sequence  EVDALGGLMAKAIDQAGIQFRILNASKGPAV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
SSTTS
TTS.................................................
Template Predicted Secondary structure 














.................................................
Template SS confidence 















































































   62.......70.........80.........90..
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  EGRDPQQKVAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFI
Query Conservation           

   
    

   
   
   
    

 
   
 
  
    

   
 
    

    
 

 


Alig confidence  .............
























.






















.....












Template Conservation  .............   
   
       
   
     .
 
    
  

     
 

  .....  
  
 

 


Template Sequence  . . . . . . . . . . . . . RATRAQADRVLYRQAVRTALENQPN. LMIFQQAVEDLIVENDRVVGAVT. . . . . QMGLKFRAKAVVL
Template Known Secondary structure  .............

T
TT.

SSSB.....TTS
S
Template Predicted Secondary structure  .............










.

.....




Template SS confidence 















































































   93......100.........110....... ..120.........130.........140 .........150...
 
   267..270..
Predicted Secondary structure 





Query SS confidence 





Query Sequence  GAGGAA
Query Conservation 



 
Alig confidence 





Template Conservation 




 
Template Sequence  TVGTFL
Template Known Secondary structure 

SGGG
Template Predicted Secondary structure 





Template SS confidence 





   154.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions