Job Description P33940 Confidence 99.83% Date Thu Jan 5 11:52:57 GMT 2012 Rank 20 Aligned Residues 279 % Identity 20% Template c2jbvA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:choline oxidase; PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism Resolution 1.86 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	K	A	S	E	E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		N	I	E	N	L	S	D	R	E	F	D	Y	I	V	V	G	G	G	S	A	G	A	A	V	A	A	R	L	S	E	.	D	P	A	V	S	V	A	L	V	E	A	G	P	D	D	R	G	V	P	E	V	L	Q	L	D	R	W	M	E	L	L	E	S	G	Y	D	W	D	Y	P	I	E	P	Q	E	N	G	N	S
Template Known Secondary structure			G	G	G														S											T	T	.	S	T	T	S							S	S				T	T						B	G	G	G	G	G	G	G	T	T	S	T	T	B					B				S	S	S		T
Template Predicted Secondary structure																																.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
											68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.							.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																											.	.	.	.	.	.	.	.
Template Sequence		F	M	R	H	A	R	A	K	V	M	G	G	C	S	S	.	.	.	H	N	S	C	I	A	F	W	A	P	R	E	D	L	D	E	W	E	A	K	Y	G	A	T	G	W	.	.	.	.	.	.	.	.	N	A	E	A	A	W	P	L	Y	K	R	L	E	T	N	E	D	A	G	P	D	A	P	H	H	G	D	S
Template Known Secondary structure		T						B		S	T	T	G	G	G	G	.	.	.	T	S			B															T	T			T	T		.	.	.	.	.	.	.	.	S															T	T		B	T	T	B	T	T	S		B	S
Template Predicted Secondary structure																	.	.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		G	P	V	H	L	M	N	V	P	P	K	D	P	T	G	V	A	L	L	D	A	C	E	Q	A	G	I	P	R	A	K	F	N	T	G	.	.	.	.	.	.	.	.	.	.	.	.	T	T	V	V	N	G	A	N	F	F	Q	I	N	R	R	A	D	G	T	R	S	S	S	.	.	.	S	V	S	Y	I	H	P
Template Known Secondary structure			S								S															T	T			B			S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	S			S	S									B		T	T	S	B	B				.	.	.					T	G	G
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.													.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																										.																						.								.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																						.								.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D	N	.	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	.	V	F	I	G	A	G	G	.	A	A	L	K	L	L	Q	E	S	G	I	P	E	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.																						.								.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																						.								.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	E	Q	E	N	F	T	L	L	T	G	L	R	A	R	Q	L	V	F	D	A	D	R	R	C	T	G	V	D	I	V	D	S	A	F	G	H	T	H	R	L	T	A	R	N	E	V	V	L	S	T	G	A	I	D	T	P	K	L	L	M	L	S	G	I	G	P	A	A	H	L	A	E	H	G	I	E	V	L
Template Known Secondary structure		G	T	T		T	T						S										T	T	S	B								S	S	T	T	S															S												T	T										T	T				S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
								284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	K	D	Y	A	G	F	P	V	G	G	Q	F	L	V	S	E	N	P	D	V	V	N	H	H	L	A	K	V	Y	G	K	A	S	V	G	A	P	P	M	S	V	P	H	I
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	S	P	G	V	G	E	H	L	Q	D	H	P	E	G	V	V	Q	F	E	A	K	Q	P	M	V	A	E	S	T	Q	W	W	E	I	G	I	F	T	P	T	E	D	G	L	D	R	P	D	L
Template Known Secondary structure					T	T	T	T		S	B	B												S	S				S			S	S	S									S	S	T	T		S	S		S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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