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Job DescriptionP33940
Confidence99.30%DateThu Jan 5 11:52:57 GMT 2012
Rank143Aligned Residues232
% Identity20%Templatec2hkoA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50.........60.........70.........80.........90.....
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Query Sequence  NAVSMAAKAKASEEQETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQN
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Template Sequence  NFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQS. . FGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGN
Template Known Secondary structure  S
SS
B
SS


SS
S


B..TT

SSSSSBSS

TTSS



SBT
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   263......270.........280.........290......... 300.........310.........320.........330.........340
 
   96...100...
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Query Sequence  ADGSISIE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQE
Template Known Secondary structure  TT



S



TTS
B

STTT


BSSSSB
B
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   341........350.........360.........370.........380.........390.........400.........410.........420
 
   104.....110.........120.........130..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KAVAINEAFQISRQFWAHQVERGVLRTPR
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Template Sequence  KHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEAITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKL
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TTTT
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   421........430.........440.........450.........460.........470.........480.........490.........500
 
   133......140.........150.........160.........170.........180.........190.........200.........210..
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Query Sequence  SFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEIT
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Template Sequence  QELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFT. . . . . . . . . . . . . . . . . GSHLTVRNGY
Template Known Secondary structure  S


S
S

TS
GGGBBTTTTTGGGGG

B.................S

TT
T
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   509510.........520.........530.........540.........550.........560. ........570.
 
   213......220.........230.........240.........250.........260........
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Query Sequence  RQLIASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGA
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Template Sequence  SCVPVALAE. . GLDIKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTL
Template Known Secondary structure  TTT..T

TTTTTTS

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   572.......580 .........590.........600.........610.........620.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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