Job Description P33940 Confidence 99.43% Date Thu Jan 5 11:52:57 GMT 2012 Rank 101 Aligned Residues 236 % Identity 12% Template c2eq8E_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp Resolution 1.94 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I	N
Query Conservation
Alig confidence																									.	.
Template Conservation																									.	.
Template Sequence		K	T	Y	D	L	I	V	I	G	T	G	P	G	G	Y	H	A	A	I	R	A	A	Q	.	.	L	G	L	K	V	L	A	V	E	A	G	E	V	G	G	V	C	L	N	V	G	C	I	P	T	K	A	L	L	H	A	A	E	T	L	H	H	L	K	V	A	E	G	F	G	L	K	A	K	P	E	L	D	L	K
Template Known Secondary structure												S													.	.	T	T								S	S		T	T						T	S																					G	G	G	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																													.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	G	G	W	R	D	Q	V	V	K	K	L	T	G	G	V	G	T	L	L	K	G	N	G	V	E	L	L	R	G	F	A	R	L	V	G	P	K	E	V	E	V	G	G	E	R	Y	G	A	K	S	L	I	L	A	T	G	S	E	P	L	E	L	K	G	F	P	F	G	E	D	V	W	D	S	T	R	A	L
Template Known Secondary structure																									T	T						S							T	T					T	T																			B	T	T	B			S	S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		K	V	E	E	G	L	P	K	R	L	L	V	I	G	G	G	A	V	G	L	E	L	G	Q	V	Y	R	R	L	G	A	E	V	T	L	I	E	Y	M	P	E	I	L	P	Q	G	D	P	E	T	A	A	L	L	R	R	A	L	E	K	E	.	G	I	R	V	R	T	K	T	K	A	V	G	Y	E	K	K	K	D
Template Known Secondary structure			G	G	G				S								S													T	T								S	S	S	S	S	S	T	T	S															T	.	T						S										T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		G	.	L	H	V	R	L	E	P	A	E	G	G	E	G	E	E	V	V	V	D	K	V	L	V	A	V	G
Template Known Secondary structure			.								T	T			S							S						S
Template Predicted Secondary structure			.
Template SS confidence
		249		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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