Job Description P33940 Confidence 99.54% Date Thu Jan 5 11:52:57 GMT 2012 Rank 77 Aligned Residues 240 % Identity 12% Template c1zmcG_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+ Resolution 2.53 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.
Query Sequence		E	E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	.	.	.	.	.	.	.	.	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S
Query Conservation																																																		.	.	.	.	.	.	.	.
Alig confidence																												.	.																					.	.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		Q	P	I	D	A	D	V	T	V	I	G	S	G	P	G	G	Y	V	A	A	I	K	A	A	Q	L	.	.	G	F	K	T	V	C	I	E	K	N	E	T	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	N	N	S	H	Y	Y	H	M	A	H	G	T	D	F	A	S	R	G	I	E	M	S	E
Template Known Secondary structure														S														.	.	T									S	S	S	S	S							S																			S					T	T	T				S
Template Predicted Secondary structure																												.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																														.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	I	E	K	A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	L	N	L	D	K	M	M	E	Q	K	S	T	A	V	K	A	L	T	G	G	I	A	H	L	F	K	Q	N	K	V	V	H	V	N	G	Y	G	K	I	T	G	K	N	Q	V	T	A	T	K	A	D	G	G	T	Q	V	I	D	T	K	N	I	L	I	A	T	G	S	E	V	T	P	F	P	G	I	T	I
Template Known Secondary structure																															T	T						S							T	T							T	T	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	D	T	I	V	S	S	T	G	A	L	S	L	K	K	V	P	E	K	M	V	V	I	G	A	G	V	I	G	V	E	L	G	S	V	W	Q	R	L	G	A	D	V	T	A	V	E	F	L	G	H	V	G	G	V	G	I	D	M	E	I	S	K	N	F	Q	R	I	L	Q	K	Q	G	F	K	F	K	L	N
Template Known Secondary structure			S	S	S								T	T		S	S			S								S													T	T								S	S	S	S	S	S		T	T																	T						S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	V	R	A	L	K	R	N	D	D	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	V	T	G	A	T	K	K	S	D	G	K	I	D	V	S	I	E	A	A	S	G	G	K	A	E	V	I	T	C	D	V	L	L	V	C	I	G
Template Known Secondary structure											T	T	S									T	T	S									S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions