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Job DescriptionP33940
Confidence99.95%DateThu Jan 5 11:52:57 GMT 2012
Rank11Aligned Residues351
% Identity14%Templatec1y56B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
Resolution2.86 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100........
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Query Sequence  EQETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAVAI
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Template Sequence  PEKSEIVVIGGGIVGVTIAHELAK. . RGEEVTVIEKRF. IGSGSTF. . RCGTGIRQQF. . . . . . . . . . . . . . . . . NDEAN
Template Known Secondary structure 
SB
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   3......10.........20...... ...30........ .40..... ....50..... ....60
 
   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  NEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVMEG
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Template Sequence  VRVMKRSVELWKKYSEEYGFS. . . . . FKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPT. . . KLITPEEAKEIVPL. . . .
Template Known Secondary structure  T

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   61........70.........80. ........90.........100.........110.... .....120........
 
   189190.........200.........210.........220.........230.........240.........250.........260........
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Query Sequence  RDPQQKVAATRTEIGTDVNYGEITRQLIASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGA
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Template Sequence  LDISEVIAASWNPTDGKADPFEATTAFAVKAKEY. GAKLLEYTEVKGFLIENNEIKGVKT. . . . . . NKGIIKTGIVVNAT
Template Known Secondary structure 


TT

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T.T

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SSSB......TT
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   129130.........140.........150.........160.. .......170.........180....... ..190.........200.
 
   269270.........280.........290.........300.........310.........320.........330.........340........
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Query Sequence  GGAALKLLQESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLDGKRVVLFGPFATFS
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Template Sequence  NAWANLINAMAG. . IKTKIPIEPYKHQAVITQPI. . . KRGTINPMVISFKYGHAYLTQTFHGGIIGGIGY. . . . . . . . . .
Template Known Secondary structure  GGGT..

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...STTSS
SSTTTT

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S
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   202.......210... ......220.........230... ......240.........250.........260......
 
   349350.........360.........370.........380.........390.........400.........410.........420........
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Query Sequence  TKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVMLSEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRD
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Template Sequence  . . . . . . EIGPTYDLTPTYEFLRE. . . . . . . . . . . . . . . . . . . . . . . . . VSYYFTKIIPALKNLLILRTWAGYYA. . . . . .
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BSS






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GGGGGS
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   267..270.........280... ......290.........300.........
 
   429430.........440.........450.........460.........470....
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Query Sequence  AEKGGVLRLGTEVVSDQQGTIAALLGASPGASTAAPIMLNLLEKVF
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Template Sequence  KTPDSNPAIGR. . IEELNDYYIAAGFSGHGFMMAPAVGEMVAELIT
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TTS

..SSSBT

TT
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   310.........320 .........330.........340.........350...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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