Job Description P33940 Confidence 99.79% Date Thu Jan 5 11:52:57 GMT 2012 Rank 28 Aligned Residues 265 % Identity 15% Template c1cf3A_ PDB info PDB header:oxidoreductase(flavoprotein) Chain: A: PDB Molecule:protein (glucose oxidase); PDBTitle: glucose oxidase from apergillus niger Resolution 1.90 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	S	M	A	A	K	A	K	A	S	E	E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T	M	V	E	R	L	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	Q	E	S	S	N	G	W	N	N	A	G
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		E	A	S	L	L	T	D	P	K	D	V	S	G	R	T	V	D	Y	I	I	A	G	G	G	L	T	G	L	T	T	A	A	R	L	T	E	.	N	P	N	I	S	V	L	V	I	E	S	G	S	Y	E	S	D	R	G	P	I	I	E	D	L	N	A	Y	G	D	I	F	G	S	S	V	D	H	A	Y	E	T	V
Template Known Secondary structure					S	B			G	G	G	T	T	T											S											T	T	.	S	T	T								S	S				T	T	S						B	G	G	G	T	T	T	T	T	T	S	T	T	B
Template Predicted Secondary structure																																						.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A	H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	A	T	N	N	Q	T	A	L	I	R	S	G	N	G	L	G	G	S	T	L	V	N	G	G	T	W	T	R	P	H	K	A	Q	V	D	S	W	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	G	N	E	G	W	N	W	D	N	V	A	A	Y	S	L	Q	A
Template Known Secondary structure				T	T	T	S								B		S	T	T	G	G	G	G	T	S			B															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T		S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		161																																			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E	W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	A	R	A	P	N	A	K	Q	I	A	A	G	H	Y	F	N	A	S	C	H	G	V	N	G	T	V	H	A	G	P	R	D	T	G	D	D	Y	S	P	I	V	K	A	L	M	S	A	V	E	D	R	G	V	P	T	K	K	D	F	G	C	G	D	P	H	G	V	S	M	F	P	N	T	L	H	E	D	Q
Template Known Secondary structure															T					G	G	G	S		S	S	S	S				B					S	S		B		T											T	T	T			B				T	T	S	S										B	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																						.	.	.	.																													.
Query SS confidence																																						.	.	.	.																													.
Query Sequence		N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D	D	N	.	.	.	.	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A	G	G	.	A	A	L	K	L	L	Q	E	S	G	I
Query Conservation																																						.	.	.	.																													.
Alig confidence																																						.	.	.	.																													.
Template Conservation
Template Sequence		V	R	S	D	A	A	R	E	W	L	L	P	N	Y	Q	R	P	N	L	Q	V	L	T	G	Q	Y	V	G	K	V	L	L	S	Q	N	G	T	T	P	R	A	V	G	V	E	F	G	T	H	K	G	N	T	H	N	V	Y	A	K	H	E	V	L	L	A	A	G	S	A	V	S	P	T	I	L	E	Y	S	G	I
Template Known Secondary structure		B	B								T	G	G	G	T	T		T	T						S											S	S	S	S												T	T															S		T	T	T								T	T	B
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		282	.																		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	D	Y	A	G	F	P	V	G	G	Q	F	L	V	S	E	N	P
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	K	S	I	L	E	P	L	G	I	D	T	V	V	D	L	P	V	G	L	N	L	Q	D	Q	T	T	A	T	V	R	S	R	I	T	S	A
Template Known Secondary structure		S						G	G	G	T				S	B				T	T			B	B													G	G
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions