Job Description P13458 Confidence 99.95% Date Thu Jan 5 11:33:35 GMT 2012 Rank 1 Aligned Residues 340 % Identity 17% Template c3qg5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rad50; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair Resolution 3.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		M	K	I	L	S	L	R	L	K	N	L	N	S	L	K	G	E	W	K	I	D	F	T	R	E	P	F	A	S	N	G	L	F	A	I	T	G	P	T	G	A	G	K	T	T	L	L	D	A	I	C	L	A	L	Y	H	E	T	P	R	L	S	N	V	S	Q	S	Q	N	D	L	M	T	R	D	T	.	.	A	E
Query Conservation																																																																														.	.
Alig confidence																		.						.	.	.	.	.	.																																.	.	.	.														.	.
Template Conservation																		.						.	.	.	.	.	.																																.	.	.	.
Template Sequence		X	R	P	E	R	L	T	V	R	N	F	L	G	L	K	N	.	V	D	I	E	F	.	.	.	.	.	.	Q	S	G	I	T	V	V	E	G	P	N	G	A	G	K	S	S	L	F	E	A	I	S	F	A	L	F	G	N	G	I	.	.	.	.	R	Y	P	N	S	Y	D	Y	V	N	R	N	A	V	D	G	T
Template Known Secondary structure											S	B	T	T		S		.						.	.	.	.	.	.		S	S							S	T	T	S	S													T	S			S	.	.	.	.	S		S	S	G	G	G	G	B		S	S	S	S	S
Template Predicted Secondary structure																		.						.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.							.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	A	E	V	E	F	E	V	K	G	E	A	Y	R	A	F	W	S	Q	N	R	A	R	N	Q	P	D	G	N	L	Q	V	P	R	V	E	L	A	R	C	A	D	G	K	I	L	A	D	K	V	K	D	K	L	E	L	T	A	T	L	T	G	L	D	Y	G	R	F	T	R	S	M	L	L	S	Q	G	Q	F
Query Conservation
Alig confidence																									.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		A	R	L	V	F	Q	F	E	R	G	G	K	R	Y	E	I	I	R	E	I	N	A	L	.	.	.	.	Q	R	K	H	N	A	K	L	S	E	I	L	E	N	G	K	K	A	A	I	A	A	K	P	T	S	V	K	Q	E	V	E	K	I	L	G	I	E	H	R	T	F	I	R	T	V	F	L	P	Q	G	E	I
Template Known Secondary structure											S	S	S										T	T	.	.	.	.	T	T											T	T	S					S			S											T	T	T								T	T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	F	L	N	A	K	P	K	E	R	A	E	L	L	E	E	L	T	G	T	E	I	Y	G	Q	I	S	A	M	V	F	E	Q	H	K	S	A	R	T	E	L	E	K	L	Q	A	Q	A	S	G	V	T	L	L	T	P	E	Q	V	Q	S	L	T	A	S	L	Q	V	L	T	D	E	E	K	Q	L	I	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	L	L	I	S	P	P	S	E	I	T	E	I	I	S	D	V	F	Q	S	K	E	T	L	E	K	L	E	K	L	L	K	E	K	X	K	K	L	E	N	E	K	K	L	K	E	X	S	D	E	Y	N	N	L	D	L	L	R	K	Y	L	F	D	K	S	N	F	S	R	Y	F	T	G	R	V	L	E	A	V
Template Known Secondary structure						T															S																																													T	T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	Q	E	Q	Q	S	L	N	W	L	T	R	Q	D	E	L	Q	Q	E	A	S	R	R	Q	Q	A	L	Q	Q	A	L	A	E	E	E	K	A	Q	P	Q	L	A	A	L	S	L	A	Q	P	A	R	N	L	R	P	H	W	E	R	I	A	E	H	S	A	A	L	A	H	I	R	Q	Q	I	E	E	V	N	T
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		L	K	R	T	K	A	Y	L	D	I	L	T	N	G	R	F	D	I	D	F	D	D	E	K	G	G	F	I	I	K	D	W	G	I	E	R	P	.	.	.	.	.	.	.	.	A	R	G	L	S	G	G	E	R	A	L	I	S	I	S	L	A	X	S	L	A	E	V	A	S	G	R	L	D	A	F	F	I	D	E
Template Known Secondary structure												T	T	T	T								S	S	S	S	S						T	T					.	.	.	.	.	.	.	.	G	G	G	S																									S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.									.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Q	S	T	M	A	L	R	A	S	I	R	H	H	A	A	K	Q	S	A	E	L	Q	Q	Q	Q	Q	S	L	N	T	W	L	Q	E	H	D	R	F	R	Q	W	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	S	S	L	D	T	E	N	K	E	K	I	A	S	V	L	K	E	L	E	R	L	N	K	V	I	V	F	I	T	H	D	R	E	F	S	E	A	F	D	R	K	L	R
Template Known Secondary structure					G	G	G												G	G	G	G	G	G		S								S						T		S	S
Template Predicted Secondary structure
Template SS confidence
		799	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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