Job Description P13458 Confidence 94.81% Date Thu Jan 5 11:33:35 GMT 2012 Rank 272 Aligned Residues 244 % Identity 10% Template c2oevA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Resolution 3.30 Å

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		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	I	E	Q	R	Q	Q	L	L	L	T	T	L	T	G	Y	A	L	T	L	P	Q	E	D	E	E	E	S	W	L	A	T	R	Q	Q	E	A	Q	S	W	Q	Q	R	Q	N	E	L	T	A	L	Q	N	R	I	Q	Q	L	T	P	I	L	E	T	L	P	Q	S	D	E	L	P	H	C	E	E	T	V	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	L	P	E	L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R
Template Known Secondary structure																																		T	T	S	S	S	S			S							S	S																													T	T
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	W	R	Q	V	H	E	Q	C	L	A	L	H	S	Q	Q	Q	T	L	Q	Q	Q	D	V	L	A	A	Q	S	L	Q	K	A	Q	A	Q	F	D	T	A	L	Q	A	S	V	F	D	D	Q	Q	A	F	L	A	A	L	M	D	E	Q	T	L	T	Q	L	E	Q	L	K	Q	N	L	E	N	Q	R	R	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	I	V	L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	M	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	M	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E
Template Known Secondary structure								T	S									S							S	S		S	S																																														S	S	S
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		797	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830														.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	L	V	T	Q	T	A	E	T	L	A	Q	H	Q	Q	H	R	P	D	D	G	L	A	L	T	V	T	V	E	Q	I	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	A	Q	T	H	Q	K	L	R	E	N	T	T	S	Q	G	E	I	R	Q	Q	L	K	Q	D	A	D	N	R	Q	Q	Q
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	M	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y
Template Known Secondary structure												T																																S			S	S
Template Predicted Secondary structure
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		864	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	L	M	Q	Q	I	A	Q	M	T	Q	Q	V	E	D	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	L	T	E	I	L	V	R	F	Q	N	K	C	S	D	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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