 |
Job Description | P76514 | Confidence | 27.50% | Date | Thu Jan 5 12:23:54 GMT 2012 |
Rank | 29 | Aligned Residues | 88 |
% Identity | 10% | Template | c3aqnA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:poly(a) polymerase; |
PDBTitle: complex structure of bacterial protein (apo form ii)
|
Resolution | 3.30 Å |
|
 |
  |   |
31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | |
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | N | I | C | R | F | A | G | H | L | S | H | F | Y | S | V | A | Q | H | A | V | L | C | S | Q | L | . |
. |
. |
. |
. |
. |
V | P | Q | E | F | A | F | E | A | L | M | . |
H | D | A | T | E | A | Y | C | Q | D | I | P | A | P | L | K | R | L | L | P | D | Y | K | R | M | E | E | K | I | D | A | V | I | R | E |
Query Conservation |   |
|
|   |
|   |
|
|   |
|   |
|   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |
|
| . |
|
|
|   |
|   |   |   |
|
|   |   |   |
|   |
|   |   |
|   |   |
|   |   |
|
|   |
|
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|   |
|
|   |   |   |   |   |
Template Sequence |   |
I | T | R | Y | F | T | E | N | G | D | S | P | M | E | R | I | I | E | Q | V | L | K | N | T | D | T | R | I | H | N | D | M | R | V | N | P | A | F | L | F | A | A | M | F | W | Y | P | L | L | E | T | A | Q | K | I | A | Q | E | S | G | L | T | Y | H | D | A | F | A | L | A | M | N | D | V | L | D | E | A | C | R |
Template Known Secondary structure |   |
 |  | T | T |
|
| T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
268 | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . |
  |
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | Y | G | L | P | P | V | M | S | T | P | V | K | Y | A |
Query Conservation |   |
|
|
|
|
|   |   |   |   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|   |
|   |   |   |   |
|   |   |
|
Template Sequence |   |
S | L | A | I | P | K | R | L | T | T | L | T | R | D | I |
Template Known Secondary structure |   |
 | S |
|
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
348 | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|