Job Description P39356 Confidence 100.00% Date Thu Jan 5 11:59:46 GMT 2012 Rank 3 Aligned Residues 257 % Identity 22% Template c3nzeB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	F	G	S	I	D	A	A	L	Q	I	R	D	K	F	N	L	Q	R	V	I	I	V	P	D	G	E	H	A	G	K	R	D	D	T	K	L	M	R	T	R	L	S	R	A	G	G	M	Y	L	N	Q	V	I	E	N	G	D	V	L	G	V	A	W	G	R	T	I	H	Q	M	S	K	T	M	T	P	K
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		S	P	F	D	T	G	P	E	L	E	S	Q	I	R	N	Q	Y	G	V	D	V	H	V	V	P	V	L	D	T	.	.	.	.	.	L	N	E	A	E	T	L	D	R	V	A	X	Q	A	A	R	T	I	G	P	L	V	D	S	N	A	I	I	G	V	A	W	G	A	T	L	S	A	V	S	R	H	L	T	R	K
Template Known Secondary structure			T	T																									T	T	.	.	.	.	.	S																		G	G	G			T	T								S								T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		S	C	K	N	V	T	V	I	Q	M	L	G	S	M	P	.	.	S	Q	P	D	L	T	I	I	E	S	S	S	Q	I	A	Y	K	L	S	G	R	V	A	S	L	H	V	P	A	V	V	S	S	A	R	L	A	M	E	L	Q	A	E	P	I	I	R	S	N	F	D	V	L	T	R	C	T	K	A	F	F	V	V
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		X	T	H	D	S	I	V	V	Q	L	N	G	A	G	N	X	Q	T	T	G	I	T	Y	A	S	D	I	X	R	R	F	G	S	A	Y	G	A	R	V	E	Q	F	P	V	P	A	F	F	D	H	A	S	T	K	T	A	X	W	N	E	R	S	V	Q	R	I	L	D	L	Q	A	R	X	S	I	A	I	F	G	V
Template Known Secondary structure				S	S							S					T	T	S		S																T								S		S	S		S									T	T												T	T		S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		221	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		G	N	A	L	D	E	.	.	N	P	L	I	R	V	G	V	L	N	K	K	E	M	Q	T	Y	R	D	L	G	A	V	G	V	I	C	G	R	F	Y	D	K	E	G	M	P	V	V	A	D	V	D	Q	R	I	L	G	I	S	L	A	Q	L	R	Q	I	E	R	K	I	F	L	A	G	G	E	R	G	Y	D	A
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		G	S	V	D	S	D	Y	P	S	H	V	Y	A	G	G	Y	L	D	E	H	D	L	T	X	L	A	A	D	D	V	V	G	D	V	A	T	V	F	F	R	S	D	G	S	S	D	G	I	T	L	N	E	R	S	T	G	P	S	H	E	Q	L	R	Q	V	R	R	R	I	C	V	V	S	G	A	S	K	I	N	G
Template Known Secondary structure						S	S	S	T	T	S			T	T	S	S	S		G	G	G							T	T						T	T					T	T	S			T	T		G	G	G	G	G			S							T	T	S	S								S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	A	L	L	G	G	Y	V	T	D	L	I	V	D	E	G	T	A	E	F	L	L	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	G	A	L	A	A	G	L	A	T	D	L	I	L	D	E	A	S	A	R	R	L	V	S	F
Template Known Secondary structure								T	T			S														T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions