Job Description P39356 Confidence 100.00% Date Thu Jan 5 11:59:46 GMT 2012 Rank 2 Aligned Residues 248 % Identity 22% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	D	A	A	L	Q	I	R	D	K	F	N	L	Q	R	V	I	I	V	P	D	G	E	H	A	G	K	R	D	D	T	K	L	M	R	T	R	L	S	R	A	G	G	M	Y	L	N	Q	V	I	E	N	G	D	V	L	G	V	A	W	G	R	T	I	H	Q	M	S	K	T	M	T	P	K	S	C	K	N	V
Query Conservation
Alig confidence																											.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence		S	V	Q	L	E	Q	K	L	V	E	K	F	N	L	K	R	A	L	I	S	L	D	Q	P	N	.	.	.	.	.	.	T	N	E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	T	Q	R	N	A
Template Known Secondary structure														T		S									S	S	.	.	.	.	.	.																						T	T								S
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	Q	M	L	G	S	M	P	S	Q	P	D	L	T	I	I	E	S	S	S	Q	I	A	Y	K	L	S	G	R	V	A	S	L	H	V	P	A	V	V	S	S	A	R	L	A	M	E	L	Q	A	E	P	I	I	R	S	N	F	D	V	L	T	R	C	T	K	A	F	F	V	V	G	N	A	L	D	E	N
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		R	F	V	S	A	I	G	G	T	H	.	.	.	I	I	N	A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	V	G	I	G	D	X	D	E	N	S
Template Known Secondary structure						S	B		B			.	.	.																T								S	B	S	B		S	S									T	S												T		S													T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure															.															.
Query SS confidence															.															.
Query Sequence		P	L	I	R	V	G	V	L	N	K	K	E	M	.	Q	T	Y	R	D	L	G	A	V	G	V	I	C	G	.	R	F	Y	D	K	E	G	M	P	V	V	A	D	V	D	Q	R	I	L	G	I	S	L	A	Q	L	R	Q	I	E	R	K	I	F	L	A	G	G	E	R	G	Y	D	A	T	L	G	A	L	L	G
Query Conservation															.															.
Alig confidence															.															.
Template Conservation
Template Sequence		H	X	V	K	L	G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I	V	G	D	I	G	G	F	D	F	F	K	L	D	G	T	D	A	D	T	L	X	R	G	R	V	I	G	L	E	X	E	D	L	R	Q	I	P	N	V	V	A	X	A	S	E	S	R	K	A	L	S	I	X	G	A	L	R	T
Template Known Secondary structure						T	T	S	S											T	T							T	T	T					T	T	S		B				G	G	G	G	G	B		B								T	S	S									G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	V	T	D	L	I	V	D	E	G	T	A	E	F	L	L	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	I	D	V	L	A	T	S	V	S	C	A	X	A	L	L	N	L
Template Known Secondary structure		S			S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions