Job Description P39356 Confidence 90.63% Date Thu Jan 5 11:59:46 GMT 2012 Rank 323 Aligned Residues 84 % Identity 20% Template c3ereD_ PDB info PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.														.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.
Predicted Secondary structure											.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.					.
Query SS confidence											.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.					.
Query Sequence		S	Q	T	E	V	A	A	I	M	.	.	.	.	.	G	V	S	R	V	T	V	V	K	Y	L	Q	T	A	R	E	N	G	L	V	H	I	N	L	D	V	N	V	F	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	A	A	L	Q	I	R	D	K	F	N	.	.	.	.	.	L	Q	R	V	.
Query Conservation											.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.					.
Alig confidence											.	.	.	.	.												.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.					.
Template Conservation																											.	.	.
Template Sequence		S	Q	N	E	L	A	A	L	L	A	A	E	G	I	E	V	T	Q	A	T	L	S	R	D	L	.	.	.	E	E	L	G	A	V	K	L	R	G	A	D	G	G	T	G	I	Y	V	V	P	E	D	G	S	P	V	R	G	V	S	G	G	T	D	R	M	A	R	L	L	G	E	L	L	V	S	T	D	D	S	G
Template Known Secondary structure		S											T	T													.	.	.		T	T	T							T	T	S	S										S						T	T	T	T																			T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
				85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	I	I	V	P	D	G	E	H	A	G	K	R	D	D	T	K	L	M	R	T	R	L	S	R	A	G	G	M	Y	L	N	Q	V	I	E	N	G	D	V	L	G	V	A	W	G
Query Conservation		.	.
Alig confidence		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		N	L	A	V	L	R	T	P	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	H	Y	L	A	S	A	I	D	R	.	A	A	L	P	Q	V	V	G	T	I	A	G
Template Known Secondary structure		T							S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T											.	T	T		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.														.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions