Job Description P39356 Confidence 71.48% Date Thu Jan 5 11:59:46 GMT 2012 Rank 400 Aligned Residues 148 % Identity 7% Template c2p0yA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein lp_0780; PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr6 Resolution 3.00 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150														.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	D	V	L	G	V	A	W	G	R	T	I	H	Q	M	S	K	T	M	T	P	K	S	C	K	N	V	T	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	L	G	S	M	P	S	Q	P	D	L	T	I	I	E	S	S	S	Q	I	A	Y	K	L	S	G	R	V	A	S	L	H	V	P	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	K	I	V	V	I	G	G	G	T	G	L	P	V	V	L	N	G	L	R	K	Q	A	V	D	I	T	A	V	V	T	I	R	N	V	X	V	A	L	S	S	W	P	D	L	Y	K	D	I	F	Q	G	N	L	I	G	V	F	D	A	V	Q	E	L	S	N	X	X	Q	V	D	G	H	V	Y	P	A	L	T
Template Known Secondary structure											G	G	G											S	S	S																				S						T																		T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		187	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		V	V	.	.	.	.	.	.	S	S	A	R	L	A	M	E	L	Q	A	E	P	I	I	R	S	N	F	D	V	L	T	R	C	T	K	A	F	F	V	V	G	N	A	L	D	E	N	P	L	I	R	V	G	V	L	N	K	K	E	M	Q	T	Y	R	D	L	G	A	V	G	V	I	C	G	R	F	Y	D	K	E
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.																																				.	.	.																																	.	.
Template Conservation																																													.	.	.																																	.	.
Template Sequence		L	H	G	K	F	S	D	G	T	H	K	S	L	E	R	V	W	V	T	P	Q	A	V	Q	P	V	I	D	A	I	X	A	A	D	Q	I	V	L	G	P	G	S	L	.	.	.	F	T	S	I	L	P	N	L	T	I	G	N	I	G	R	A	V	C	E	S	D	A	E	V	V	Y	I	C	N	I	X	T	.	.
Template Known Secondary structure							S	S																											S						S	S			.	.	.									S	S											S	S								S	B		.	.
Template Predicted Secondary structure																																													.	.	.																																	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	P	V	V	A	D	V	D	Q	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	T	D	N	F	S	D	A	D	H	V
Template Known Secondary structure				S	T	T		B
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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