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Job DescriptionP63883
Confidence84.23%DateThu Jan 5 12:08:11 GMT 2012
Rank9Aligned Residues179
% Identity15%Templatec2qvpC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative metallopeptidase (sama_0725) from2 shewanella amazonensis sb2b at 2.00 a resolution
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   180.........190..... ....200.........210.........220.........230..... ....240........
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Query Sequence  GKAGRDRPIVIMLDPG. HGGEDSGAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVY. . . . . . . . . . MTRNEDIFIPLQV
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Template Sequence  SPGQKAGLPNLLISAGFHGEESAG. . . . . . . . . PWGLLHFLSQLDGELFKRVNLSVLPLVNPTGFAKGHRFNELGENPNR
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SS

TTS

SSTT
T.........T

SGGGGS


S
T
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TTS
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   57..60.........70.........80 .........90.........100.........110.........120.......
 
   249 250.........260.........270.........280.........290.........300....
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Query Sequence  R. . . . . . . . . . . . . . . . . . . . . . . . VAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDL
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Template Sequence  GFFIENGKAKPGADTSAEGRILLEHAHLLQVASRDGILTCHE. . . . DVLXTDTYVYTFEPSQAPGRFSHSLRDALGQYFP
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TT

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   128.130.........140.........150.........160......... 170.........180.........190.........200...
 
   305....310.........320.........330.........340.........350.........360.........370.........380....
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Query Sequence  IGGVSKSGDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEER
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Template Sequence  IAADGDVDNCPVRSGVIFNHFDTSFESFLVRS. . . . . . . . . . . . . . . . . . . . . . . . . . . . GARVGCCSETP. GQQPLDQR
Template Known Secondary structure  B

STTBTTS


SST............................T
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   204.....210.........220.........230..... ....240...... ...250....
 
   385....390.........400
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Query Sequence  KLKTATFQQEVAESIL
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Template Sequence  ILANAAAXNTFVNXLA
Template Known Secondary structure  S
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   255....260.........270
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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