Return to main results Retrieve Phyre Job Id

Job DescriptionP69874
Confidence100.00%DateThu Jan 5 12:12:15 GMT 2012
Rank3Aligned Residues351
% Identity39%Templatec2it1B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.........80.........90.......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  VQLAGIRKCFDGKEVIPQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQS
Query Conservation 
    
 
  
    
  


 
  


  


 








  
 

  
  
 
   
            
  
   
Alig confidence 















































































Template Conservation 
    
 
       
  


 
  


  
 
 








  
 
   
  
 
 
 
            
  
 
 
Template Sequence  IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN
Template Known Secondary structure  TT
TT


TTSSTSS

STT
TTS
T
TT
Template Predicted Secondary structure 






























Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSA
Query Conservation    
    

  

                     
    
          



  


 




   
 






 
 
Alig confidence 















































































Template Conservation    
   


  
                      
    
          

 
  


 




   
 








 
Template Sequence  WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN
Template Known Secondary structure 



TTS
TT

TT
GGGTTS
GGGS
TT

SSGGGG
Template Predicted Secondary structure 





































Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   178.180.........190.........200.........210.........220.........230.........240.........250.......
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNAT
Query Conservation 

      
   
  
    
 


 



  
    



 

  


   
   

   
     
  

        
Alig confidence 















































































Template Conservation 

      
   
       
 


 


   
     
 
 

  
 
   
   

   
     
   
        
Template Sequence  LDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMNFVE
Template Known Secondary structure  S
T
S

STT
S
SBSBTTB
Template Predicted Secondary structure 


























Template SS confidence 















































































   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   258.260.........270.. .......280.........290.........300.........310.........320.........330......
Predicted Secondary structure 







.





























Query SS confidence 














.































































Query Sequence  VIERLDEQRVRANVE. GRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELENG
Query Conservation                 .                     


  
 
           
 
 
      
    
      
Alig confidence 














.



































....























Template Conservation                                       


    
       ....  
 
      
      
     
Template Sequence  AKVEDGKLVITEKSKLPIPKQYVEIVKETGITEVIIGFRPHDAEIVKGEGEG. . . . IVGEVYSFEPLGREQIVTVSVNDS
Template Known Secondary structure  TTSSSS


GGGT


GGGSS
SS....
SSTT
Template Predicted Secondary structure 






























....




Template SS confidence 















































































   244.....250.........260.........270.........280.........290..... ....300.........310.........
 
   337..340.........350.........360.........370........
Predicted Secondary structure 





















Query SS confidence 









































Query Sequence  KMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK
Query Conservation                   
  
  
 
         
     
Alig confidence 





......





























Template Conservation   
    ......     
  
  
 
      
 


    
Template Sequence  IVKVFA. . . . . . PEGEHFSFGEKVTIKVKEELLVLFDKKTEK
Template Known Secondary structure  ......TT



TT

GGG
TTT
B
Template Predicted Secondary structure  ......











Template SS confidence 









































   320..... ....330.........340.........350.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions