 |
Job Description | P10030 | Confidence | 6.97% | Date | Thu Jan 5 11:31:59 GMT 2012 |
Rank | 55 | Aligned Residues | 74 |
% Identity | 18% | Template | d1jqia2 |
SCOP info | Acyl-CoA dehydrogenase NM domain-like
| Acyl-CoA dehydrogenase NM domain-like
| Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
|
Resolution | 2.25 |
|
 |
  |   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | W | T | E | E | F | E | A | F | R | A | A | L | R | P | V | V | D | Q | M | Y | A | E | H | L | L | R | P | L | E | S | D | C | F | G | L | A | E | V | P | D | A | V | L | A | E | I | F | T | L | P | R | L | K | A | V | F | P | L | M | L | R | G | L | D | W | N | T | E | Q | A | R | T | L | A | Q | E | L | R |
Query Conservation |   |
|   |   |
|
|   |   |   |
|   |
|   |   |   |   |   |
|
|   |   |   |
|
|   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |
|   |
|   |   |
|
|
|   |
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
E | L | P | E | T | H | Q | M | L | R | Q | T | C | R | D | F | A | E | K | E | . |
. |
. |
. |
. |
L | V | P | I | A | A | Q | L | D | K | E | H | L | F | P | T | S | Q | V | K | K | M | G | E | L | G | L | L | A | M | D | V | P | E | E | L | S | G | A | G | L | D | Y | L | A | Y | S | I | A | L | E | E | I | S |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | T | T | T | T |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | S | S | S | S |
| G | G | G | T |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|