Job Description Q9JMS3 Confidence 35.88% Date Wed Jan 25 15:21:16 GMT 2012 Rank 42 Aligned Residues 172 % Identity 14% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		1161	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.		.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		S	V	N	G	Y	S	T	G	L	Y	A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	.	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y
Query Conservation																																											.
Alig confidence															.	.	.	.	.	.	.																						.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	K	Q	W	E	G	A	F	E	G	L	T	.	.	.	.	.	.	.	A	G	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															.	.	.	.	.	.	.	T	T																				T	T	T	T																						T	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.								.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P
Query Conservation
Alig confidence															.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	H	T	V	S	Y	D	Y	V	D	A	R	.	.	.	.	N	A	I	T	D	T	P	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P
Template Known Secondary structure															.	.	.	.		T	T	T			B		T	T			S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S	S	S	S
Template Predicted Secondary structure															.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.					.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.																.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	V	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	.	N	L	F	D	K	D	Y	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure																					S	S	S	S									.	S	T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions