Job Description Q9JMS3 Confidence 98.35% Date Wed Jan 25 15:21:16 GMT 2012 Rank 19 Aligned Residues 131 % Identity 9% Template d1qj8a_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution 1.90

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		1211	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		M	N	K	M	G	G	F	N	L	K	Y	R	Y	E	E	.	.	.	.	.	.	.	.	.	.	D	N	S	P	L	G	V	I	G	S	F	T	Y	T	E	K	S	.	.	.	.	R	T	A	S	S	G	D	Y	N	K	N	Q	Y	Y	G	I	T	A	G	P	A	Y	R	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	.	.	.	.	.	.	.	.	.	.	T	T		S														.	.	.	.				T	T	S																			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.											.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		1291	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	V	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T
Query Conservation
Alig confidence		.	.																						.	.	.																																								.
Template Conservation		.	.																						.	.	.																																								.
Template Sequence		.	.	N	D	W	A	S	I	Y	G	V	V	G	V	G	Y	G	K	F	Q	T	T	E	.	.	.	Y	P	T	Y	K	N	D	T	S	D	Y	G	F	S	Y	G	A	G	L	Q	F	N	P	M	E	N	V	A	L	D	F	S	Y	E	Q	S	R	I	R	.	S	V	D	V	G	T	W	I	A	G	V	G	Y	R
Template Known Secondary structure		.	.		T	T																			.	.	.	T	T	T																				S	S	T	T													T	.	T
Template Predicted Secondary structure		.	.																						.	.	.																																								.
Template SS confidence
				74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.
		1371
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		148

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions