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Job DescriptionQ9JMS3
Confidence96.19%DateWed Jan 25 15:21:16 GMT 2012
Rank32Aligned Residues145
% Identity15%Templated1phoa_
SCOP infoTransmembrane beta-barrels Porins Porin
Resolution3.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1138.1140.........1150.........1160.........1170.........1180.........1190.........1200.........1210.......
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Query Sequence  VMAGYGNNHSSTGAVRTGYHSKGSVNGYSTGLYATWYADDETHNGAYLDTWAQYGWFDNHVKGDGLPGESWKSKGLTASL
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Template Sequence  FAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANN. . . . . . . IYLATFYSETRKMTPITGGFANKTQNFEAVAQY
Template Known Secondary structure 

GGGTTSSSS
SSTT.......S
S

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   185....190.........200.........210.........220.... .....230.........240.........250.......
 
   1218.1220.........1230.........1240.........1250.........1260.........1270.........1280.........1290.......
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Query Sequence  ETGYAWKIGEFSSNYGNLNEWYVQPQAQLVWMGVKADELYESNGTLIESTGDGNVHTRLGVKTWIKRLNKMDDGKSREFS
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Template Sequence  QFDFGLRP. . . . . . . . . . . . . . . . . . . SLGYVLSKGKDIEGIGDED. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

SSS...................SBTTTB

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   264.....270. ........280.........290
 
   1298.1300.........1310.........1320.........1330.........1340.........1350.. .......1360.........1370.
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Query Sequence  PFVEVNWLHNTRDFGVRMNGEPVYQDGTRNIGEVKTGVEGQINPHLNLWGNVRVQ. . . . . VGDKGYNDTSAMLGVKYTF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF
Template Known Secondary structure  .............................SSSS


SS
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   291........300.........310.........320.........330.........340
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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