Job Description Q9JMS3 Confidence 99.07% Date Wed Jan 25 15:21:16 GMT 2012 Rank 10 Aligned Residues 150 % Identity 21% Template d1p4ta_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution 2.55

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1178	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.											.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.											.	.
Template Sequence		E	G	A	S	G	F	Y	V	Q	A	D	A	A	H	A	K	A	S	S	S	L	G	.	.	.	.	.	.	.	.	.	S	A	K	G	F	S	P	R	I	S	A	G	Y	R	I	.	.	.	.	.	.	.	.	.	.	.	.	N	D	L	R	F	A	.	.	.	.	V	D	Y	T	R	Y	K	N	Y	K	.	.
Template Known Secondary structure																					S	S		.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	T	T					.	.	.	.									S	S	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.
		1258	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																									.	.	.	.	.	.																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.																									.	.	.	.	.	.																			.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	P	S	T	D	F	K	L	Y	S	I	G	A	S	A	I	Y	D	F	D	T	Q	S	P	.	.	.	.	.	.	V	K	P	Y	L	G	A	R	L	S	L	N	R	A	S	V	D	L	.	.	.	G	G	S	D	S	F	S	Q	T	S	I	G	L	G	V	L	T	G	V	S	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.			S	S																		S	S	S	.	.	.	.	.	.																			.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																									.	.	.	.	.	.																			.	.	.
Template SS confidence
										54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		1338	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.						.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	V	.	.	.	.	.	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		A	V	T	P	N	V	D	L	D	A	G	Y	R	Y	N	Y	I	G	K	V	N	T	V	K	N	V	R	S	G	E	L	S	A	G	V	R	V	K	F
Template Known Secondary structure					T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions