Job Description Q9JMS3 Confidence 7.82% Date Wed Jan 25 15:21:16 GMT 2012 Rank 54 Aligned Residues 186 % Identity 13% Template d1kmoa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.00

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		1161	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.		.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		S	V	N	G	Y	S	T	G	L	Y	A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	.	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y
Query Conservation																																											.
Alig confidence															.	.	.	.	.	.	.																						.																																	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																																																							.	.	.	.	.
Template Sequence		K	A	R	T	W	E	L	G	T	R	Y	D	D	.	.	.	.	.	.	.	G	A	L	T	A	E	M	G	L	F	L	I	N	F	N	N	Q	Y	D	S	N	Q	T	N	D	T	V	T	A	R	G	K	T	R	H	T	G	L	E	T	Q	A	R	Y	D	L	G	T	L	T	P	T	L	D	.	.	.	.	.	N
Template Known Secondary structure															.	.	.	.	.	.	.	S	S																S	S			S	S	S			T	T																		G	G	G	T		G	G	G	T	.	.	.	.	.	T
Template Predicted Secondary structure															.	.	.	.	.	.	.																																																							.	.	.	.	.
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.								.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.						.
		1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.			.	1310	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	.	.	R	D	F	G	V	R	M	N	G
Query Conservation																																																																							.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	I	Y	A	S	Y	A	Y	V	N	A	E	I	R	E	K	G	D	T	Y	G	N	L	V	P	F	S	P	K	H	K	G	T	L	G	V	D	Y	K	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	N	W	T	F	N	L	N	S	D	F	Q	S	S	Q	F	A	D	N	A	N	T	V	K	E	S
Template Known Secondary structure																	S	S	S	T	T	T	T		B		T	T			S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	T													B		S	S	T	T				S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.														.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
		1318	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340				.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.															.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure																									.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	.	.	.	P	H	L	N	L	W	G	N	V	R	V	Q	V	G	D	K	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation																									.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	G	S	T	G	R	I	P	G	F	M	L	W	G	A	R	V	A	Y	D	F	G	P	Q	M	A	D	L	N	L	A	F	G	V	K	N	I	F	D	Q	D	Y	F	I	R	S	Y	D	D	N	N	K	G	I	Y	A	G	Q	P	R	T	L	Y	M	Q	G	S	L	K	F
Template Known Secondary structure		T	T	S	S	S	S		B																T	T	T	T										S	T	T										S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions