Job Description Q9JMS3 Confidence 97.63% Date Wed Jan 25 15:21:16 GMT 2012 Rank 22 Aligned Residues 147 % Identity 14% Template d1i78a_ SCOP info Transmembrane beta-barrels OMPT-like Outer membrane protease OMPT Resolution 2.60

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		1211	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.							.	.	.	.												.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	.	.	.	.	.	.	E	L	Y	E	.	.	.	.	.	.	.	.	.	.	.	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H
Query Conservation																																														.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	N	E	F	D	L	N	I	K	G	W	L	L	N	E	P	.	.	.	.	.	.	.	.	.	N	Y	R	L	G	L	M	A	G	Y	Q	E	S	R	Y	S	F	T	A	R	G	G	S	Y	I	Y	S	S	E	E	G	F	R	D	D	I	G	S	F	P	N	G	E	R	A	I	G	Y	K	Q	R	F	K	M
Template Known Secondary structure																		S	.	.	.	.	.	.	.	.	.	S																									B			T	T		S	S		B			B			T	T		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.										.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		1274	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.		.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330		.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.
Predicted Secondary structure																																.																												.
Query SS confidence																																.																												.
Query Sequence		T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	.	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	.	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V
Query Conservation																																.																												.
Alig confidence													.																			.										.	.	.	.															.
Template Conservation													.																													.	.	.	.
Template Sequence		P	Y	I	G	L	T	G	S	Y	R	Y	.	E	D	F	E	L	G	G	T	F	K	Y	S	G	W	V	E	S	S	D	N	D	E	H	Y	D	P	K	G	.	.	.	.	R	I	T	Y	R	S	K	V	K	D	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	V	T	P	N	A	K	V	Y	V	E	G	A	W
Template Known Secondary structure													.	T	T																								S	S	S	.	.	.	.																										T	T
Template Predicted Secondary structure													.																													.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		1352	.	.	.	.	.	.																									.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	G	D	K	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	V	T	N	K	K	G	N	T	S	L	Y	D	H	N	N	N	T	S	D	Y	S	K	N	G	A	G	I	E	N	Y	N	F	I	T	T	A	G	L	K	Y	T	F
Template Known Secondary structure																T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions