Job Description Q9JMS3 Confidence 99.57% Date Wed Jan 25 15:21:16 GMT 2012 Rank 8 Aligned Residues 535 % Identity 14% Template d1daba_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Virulence factor P.69 pertactin Resolution 2.50

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		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	L	Y	I	N	G	N	G	A	V	R	V	S	T	P	T	D	V	N	G	I	P	Q	V	I	N	S	S	L	S	L	L	E	Q	D	D	S	N	A	T	I	K	L	V	D	A	S	S	A	V	V	K	G	N	G	G	N	L	Q	L	Q	D	A	S	G	Q	V	I	S	S	G	K	Q	R	N	I	V	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	Q	S	I	V	K	T	G	E	R	Q	H	G	I	H	I	Q	G	S	D	P	G	G	V	R	T	A	S	G	T	T	I	K	V	S	G	R	Q	A	Q	G	I	L	L	E	N	P	A	A	E	L	Q	F	R	N	G	S	V	T	S	S	G	Q	L	S	D	D	G	I	R	R	F	L	G	T	V	T	V	K
Template Known Secondary structure			S							S	T	T			S					T	T	S									S							S	T	T			S														S							S			B		S	S	S	S		B			S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	N	V	A	K	G	V	Y	D	Y	R	L	T	S	G	P	H	N	D	G	L	Y	I	G	Y	A	L	T	Q	L	D	L	L	A	S	G	V	D	A	L	V	L	D	A	A	G	T	T	G	N	A	A	D	M	S	A	R	I	T	G	A	G	D	L	A	F	N	S	Q	K	G	E	T	V	S	L	S	N	Q
Query Conservation
Alig confidence																																																			.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		A	G	K	L	V	A	D	H	A	T	L	A	N	V	G	D	T	W	D	D	D	G	I	A	L	Y	V	A	G	E	Q	A	Q	A	S	I	A	D	S	T	L	Q	G	A	G	G	V	Q	I	.	.	.	.	E	R	G	A	N	V	T	V	Q	R	S	A	I	V	D	G	G	L	H	I	G	A	L	Q	S	L	Q
Template Known Secondary structure									S							S		T	T	T	S									S	T	T							S					S	T	T					.	.	.	.		T	T							S					S	B							S	S			S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	D	Y	T	G	V	T	A	I	R	G	G	N	V	L	M	N	S	N	S	V	L	G	Q	T	S	E	I	R	L	A	T	D	T	R	L	D	M	N	G	H	S	Q	T	V	G	K	L	N	G	A	A	G	S	V	L	N	I	N	G	G	N	L	T	L	T	D	D	G	V	S	A	G	T	L	T	G	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	D	L	P	P	S	R	V	V	L	R	D	T	N	V	T	A	V	P	A	S	G	A	P	A	A	V	S	V	L	G	A	S	E	L	T	L	D	G	G	H	I	T	G	G	R	A	A	G	V	A	A	M	Q	G	A	V	V	H	L	Q	R	A	T	I	R	R	G	D	A	L	A	G	G	A	V	P	G	G
Template Known Secondary structure					S									S							T	T	S			S							S	S														S	S							S	S												S						S	S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	N	I	S	G	G	V	L	D	I	T	G	G	N	H	T	F	A	V	S	T	I	I	A	K	D	A	T	V	R	M	N	D	V	S	G	L	G	T	G	N	I	S	N	A	G	T	L	S	L	T	H	A	S	G	L	L	S	N	N	L	S	G	S	G	T	V	S	L	I	N	S	D	T	Q	I	S	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	P	G	G	A	V	P	G	G	F	G	P	G	G	F	G	P	V	L	D	G	W	Y	G	V	D	V	S	G	S	S	V	E	L	A	Q	S	I	V	E	A	P	E	L	G	A	A	I	R	V	G	R	G	A	R	V	T	V	P	G	G	S	L	S	A	P	H	G	N	V	I	E	T	G	G	A	R	R	F
Template Known Secondary structure		S			S					S	S	S			S	S				S	S		S								S	S						S							S	S								T	T							S	S																S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	N	Y	S	G	L	F	V	V	D	T	S	S	Q	L	T	A	T	G	A	Q	N	L	G	I	A	S	V	S	N	R	G	I	L	Q	L	N	N	T	T	D	W	Q	L	I	N	N	V	T	G	T	G	N	V	R	K	T	G	S	G	S	L	T	V	R	S	N	A	A	W	S	G	Q	T	D	I	D	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	Q	A	A	P	L	S	I	T	L	Q	A	G	A	H	A	Q	G	K	A	L	L	Y	R	V	L	P	E	P	V	K	L	T	L	T	G	G	A	D	A	Q	G	D	I	V	A	T	E	L	P	S	I	P	G	T	S	I	G	P	L	D	V	A	L	A	S	Q	A	R	W	T	G	A	T	R	A	V	D	S
Template Known Secondary structure			S	S	S									T	T													S	S									T	T											S		S	S	S		G	G	G	S									T	T							B	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		871	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	I	L	G	Q	S	D	A	P	V	M	L	A	S	S	L	V	N	I	A	K	N	G	K	L	T	G	F	G	G	V	V	G	N	V	T	N	S	G	S	L	D	L	R	S	A	A	P	G	N	I	L	T	I	G	G	N	Y	T	G	N	N	G	T	L	L	I	N	T	V	L	D	D	S	S	S	A	T	D
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Sequence		L	S	I	D	N	A	T	W	V	M	T	D	N	S	N	V	G	A	L	R	L	A	S	D	G	S	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	Q	P	A	E	A	G	R	F	K	V	L	T	V	N	T	L	A	G	S	G	L	F	R	M	N	V	.	.	F	A	D	L	G	L	S	D
Template Known Secondary structure						S							S											T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	T	T																					.	.		G	G	G	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.															.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.			.	.	.	.	.	460	.	.
		951	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.			.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		K	L	V	I	K	G	D	A	S	G	K	T	R	V	A	V	T	N	V	G	G	S	G	A	N	T	L	N	S	I	E	V	I	H	V	D	G	N	A	A	N	A	E	F	I	Q	A	.	.	G	R	I	A	A	G	A	Y	D	Y	T	L	G	R	G	P	G	S	N	Y	G	N	W	Y	L	S	S	S	K	N	T
Query Conservation																																																	.	.
Alig confidence																										.																							.	.																	.	.	.
Template Conservation																										.																																									.	.	.
Template Sequence		K	L	V	V	M	Q	D	A	S	G	Q	H	R	L	W	V	R	N	S	G	S	E	P	A	.	S	A	N	T	L	L	L	V	Q	T	P	L	G	S	A	A	T	F	T	L	A	N	K	D	G	K	V	D	I	G	T	Y	R	Y	R	L	A	A	N	G	.	.	.	N	G	Q	W	S	L	V	G	A	K	A	P
Template Known Secondary structure											S										S				S	.	S											S	S									S	G	G	G					T	T									S	.	.	.	S	S
Template Predicted Secondary structure																										.																																									.	.	.
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.
		1029
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		539