Job Description Q9JMS3 Confidence 97.20% Date Wed Jan 25 15:21:16 GMT 2012 Rank 28 Aligned Residues 634 % Identity 12% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

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		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	F	A	F	Q	N	S	T	N	T	Q	E	F	T	G	T	L	A	L	S	D	T	L	F	D	L	S	D	D	N	T	T	A	L	T	S	A	L	V	L	A	G	V	G	S	V	I	T	A	G	T	G	T	Q	V	I	N	G	F	S	F	D	G	G	A	V	N	F	G	A	V	T	Q	G	A	Q	Q	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	T	S	L	Y	T	R	A	G	N	G	V	Y	T	I	S	G	N	D	N	G	Q	G	S	I	T	Q	K	S	G	I	P	S	E	I	K	I	T	L	A	N	M	S	L	P	L	K	E	K	D	K	V	H	N	P	R	Y	D	G	P	N	I	Y	S	P	R	L	N	N	G	E	T	L	Y	F	M	D	Q	K
Template Known Secondary structure									T	T	S										T									S	S	S	S	S	S									T	T	S		S	S							S	G	G	G		S										T									S	S
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	I	Q	V	T	D	N	L	Y	I	N	G	N	G	A	V	R	V	S	T	P	T	D	V	N	G	I	P	Q	V	I	N	S	S	L	S	L	L	E	Q	D	D	S	N	A	T	I	K	L	V	D	A	S	S	A	V	V	K	G	N	G	G	N	L	Q	L	Q	D	A	S	G	Q	V	I	S	S	G	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	S	L	I	F	A	S	D	I	N	Q	G	A	G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	Q	T	W	Q	G	A	G	I	H	V	S	E	N	S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q	A	K	G	E	N	K	G	S	I	S	V
Template Known Secondary structure								S	S					T	T							S							S	S	S		B			S	S						T	T								B			T	T							S	S	S							B	S	B
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	I	V	Q	Q	G	K	N	V	A	K	G	V	Y	D	Y	R	L	T	S	G	P	H	N	D	G	L	Y	I	G	Y	A	L	T	Q	L	D	L	L	A	S	G	V	D	A	L	V	L	D	A	A	G	T	T	G	N	A	A	D	M	S	A	R	I	T	G	A	G	D	L	A	F	N	S	Q	K	G	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	G	K	V	I	L	E	Q	Q	A	D	D	Q	G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D	K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N	T	D	E	G	A	M	I	V	N	H	N	T
Template Known Secondary structure											B			T	T				B	S		S														S	S	S	S		S		G	G	G					T	T							T	T						S	S					S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	S	N	Q	D	N	D	Y	T	G	V	T	A	I	R	G	G	N	V	L	M	N	S	N	S	V	L	G	Q	T	S	E	I	R	L	A	T	D	T	R	L	D	M	N	G	H	S	Q	T	V	G	K	L	N	G	A	A	G	S	V	L	N	I	N	G	G	N	L	T	L	T	D	D	G	V	S	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	A	A	N	V	T	I	T	G	N	E	S	I	V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N	K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T	N	L	K	G	D	I	T	Q	T	K	G	K
Template Known Secondary structure		S	S										S			S				S	S				G	G	G	G		S						S			S				T	T	S												S	S	S	S							S					S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
		705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	G	G	G	F	L	N	I	S	G	G	V	L	D	I	T	G	G	N	H	T	F	A	V	S	T	I	I	A	K	D	A	T	V	R	M	N	D	V	S	G	L	G	T	G	N	I	S	N	A	G	T	L	S	L	T	H	A	S	G	L	L	S	N	N	L	S	G	S	G	T	V	S	L	I	N	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	F	S	G	R	P	T	P	H	A	Y	N	H	L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	N	R	T	F	K	A	E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V	S	N	N	A	N	A	T	F	G	V	V	P
Template Known Secondary structure														B											T			S	B					T	T																S	S						S	S												T	T									T
Template Predicted Secondary structure
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
		785	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	I	S	G	N	N	S	N	Y	S	G	L	F	V	V	D	T	S	S	Q	L	T	A	T	G	A	Q	N	L	G	I	A	S	V	S	N	R	G	I	L	Q	L	N	N	T	T	D	W	Q	L	I	N	N	V	T	G	T	G	N	V	R	K	T	G	S	G	S	L	T	V	R	S	N	A	A	W	S	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	Q	N	T	I	C	T	R	S	D	W	T	G	L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L	T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q	F	T	L	S	N	N	A	T	Q	I	G	N
Template Known Secondary structure		T	S									T	T	T																			S							S						T	T							S	S					S						T	T							T	T					S
Template Predicted Secondary structure
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
		865	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.																									.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	I	D	D	G	S	L	I	L	G	Q	S	D	A	P	V	M	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	L	V	N	I	A	K	N	G	K	L	T	G	F	G	G	V	V	G	N	V	T	N	S	G	S	L	D	L	R	S	A	A	P	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	L	S	D	N	S	T	A	T	V	D	N	A	N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K	G	T	T	V	T	L	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N	N	S	T	I	T	L	N	S	A	Y	S	R
Template Known Secondary structure						T	T							S	S				S						T	T							S					S						T	T							S							S					S											S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		772	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
		921	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.					990	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		N	I	L	T	I	G	G	N	Y	T	G	N	N	G	T	L	L	I	N	T	V	L	D	D	S	S	S	A	T	D	K	L	V	I	K	G	D	A	S	G	K	T	R	V	A	V	T	N	V	G	G	S	G	A	N	T	L	N	S	I	E	V	I	H	V	D	G	N	A	.	.	.	.	A	N	A	E	F	I	Q
Query Conservation																																																																							.	.	.	.
Alig confidence																													.	.																										.															.	.	.	.
Template Conservation																													.	.																										.
Template Sequence		F	N	T	L	T	V	N	G	K	L	S	G	Q	G	T	F	Q	F	T	S	S	L	F	G	Y	K	S	.	.	D	K	L	K	L	S	N	D	A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	E	.	T	L	E	Q	L	T	L	V	E	S	K	D	N	Q	P	L	S	D	K	L	K	F	T	L	E
Template Known Secondary structure									S														T	T	T	T			.	.							T	T													S				S	.	S										S	S	S	S				T	T						T
Template Predicted Secondary structure																													.	.																										.
Template SS confidence
		875	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.			.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.		.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
		997	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	I	A	A	G	A	Y	D	Y	T	L	G	R	G	P	G	S	N	Y	G	N	W	Y	L	S	S	S
Query Conservation
Alig confidence																	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		N	D	H	V	D	A	G	A	L	R	Y	K	L	V	K	.	.	.	.	N	D	G	E	F	R	L	H	N	P
Template Known Secondary structure		T	S					T	T								.	.	.	.		T	T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		952	.	.	.	.	.	.	.	960	.	.	.	.	.	.					.	.	.	970	.	.	.	.	.	.