Job Description Q9JMS3 Confidence 100.00% Date Wed Jan 25 15:21:16 GMT 2012 Rank 3 Aligned Residues 245 % Identity 24% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		1086	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	T	S	M	W	M	R	H	E	G	G	H	N	R	W	R	D	G	S	G	Q	L	K	T	Q	S	N	R	Y	V	I	Q	L	G	G	D	I	A	Q	W	D	W	G	G	T	N	R	W	H	L	G	V	M	A	G	Y	G	N	N	H	S	S	T	G	A	V	R	T	G	Y	H	S	K	G	S	V	N	G	Y
Query Conservation
Alig confidence																				.	.	.	.	.																		.	.																								.	.	.	.	.
Template Conservation																				.	.	.	.	.																		.	.																								.	.	.	.	.
Template Sequence		D	A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	N	.	.	.	.	.	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	R	G	W	.	.	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	.	.	.	.	.	G	D	G	G	G	K	V	K	G	L
Template Known Secondary structure																				.	.	.	.	.																		.	.			T	T																		B	T	.	.	.	.	.	T	T	B
Template Predicted Secondary structure																				.	.	.	.	.																		.	.																								.	.	.	.	.
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.						.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.			780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.						.	.	.	.	.	.	.	810	.	.
		1166	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.					.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		S	T	G	L	Y	A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	.	.	.	.	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q
Query Conservation																																						.	.	.	.
Alig confidence													.	.	.	.																						.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template Sequence		H	V	G	G	Y	A	A	Y	V	G	D	.	.	.	.	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	.	.	.	.	.	.	.	.	.	N	D	W	F	A	E
Template Known Secondary structure												S	.	.	.	.	S	S	B																				S	S	S																				B					G	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure													.	.	.	.																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		817	.	.	820	.	.	.	.	.	.	.					.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.										.	.	880	.	.	.
		1242	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y
Query Conservation
Alig confidence																																														.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	.	.	.	.	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			S	S	S																									.	.	.	.		T	T	S																				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.					.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950
		1322	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	V	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure		.	.	.		B														G	G	G	B												S	S													B
Template Predicted Secondary structure		.	.	.
Template SS confidence
					964	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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