Job Description Q9JMS3 Confidence 93.54% Date Wed Jan 25 15:21:16 GMT 2012 Rank 34 Aligned Residues 185 % Identity 19% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		1144	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	H	S	S	T	G	A	V	R	T	G	Y	H	S	K	G	S	V	N	G	Y	S	T	G	L	Y	A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.																																			.	.
Template Conservation																																				.	.	.	.	.	.	.																																			.	.
Template Sequence		S	F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	.	.	.	.	.	.	.	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	.	.	Y	D	A
Template Known Secondary structure											B		S	S	S		G	G	G		B		S											T	T	.	.	.	.	.	.	.														S	T	T	S	S	S	S	S			S											.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.																																			.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220
		1224	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.																												.	.												.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.																												.	.												.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	N	N	V	Y	L	.	.	.	.	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	.	.	Q	N	L	E	V	V	A	Q	Y	Q	F	.	.	.	.	.	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T	T				.	.	.	.								S	S							T	T	T							S			.	.												.	.	.	.	.	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.																												.	.												.	.	.	.	.
Template SS confidence
														221	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.
		1304	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.								.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	V	G	D	K	G	Y	.	.	.	.	.	.	.	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	Q	L	N	G	A	G	G	S	.	.	.	.	.	.	.	.	.	.	.	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure				S		T	T	T	T	S		.	.	.	.	.	.	.	.	.	.	.																	S	S																S	S		T	T	T	T		S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.												.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions