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Job DescriptionQ9JMS3
Confidence98.95%DateWed Jan 25 15:21:16 GMT 2012
Rank11Aligned Residues136
% Identity21%Templatec3nb3C_
PDB info PDB header:virusChain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
Resolution19.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1177..1180.........1190.........1200.........1210.........1220.........1230.........1240.........1250......
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Query Sequence  DETHNGAYLDTWAQYGWFDNHVKGDGLPGESWKSKGLTASLETGYAWKIGEFSSNYGNLNEWYVQPQAQLVWMGVKADEL
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Template Sequence  APKDNTWYTGAKLGWSQHENK. . . . . . . . . . . . . . . LGAGAFGGYQVN. . . . . . . . . . . PYVGFE. . . . MGYDWLGRMPY
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   1........10.........20. ........30... ...... 40.........50
 
   1257..1260.........1270.........1280.........1290.........1300.........1310.........1320.........1330......
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Query Sequence  YESNGTLIESTGDGNVHTRLGVKTWIKRLNKMDDGKSREFSPFVEVNWLHNTRDFGVRMNGEPVYQDGTRNIGEVKTGVE
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Template Sequence  AY. . . . . . . . . . . KAQGVQLTAKLGYPITD. . . . . . . . DLDIYTRLGGMVWRADTY. . . SNVYGKNHDTGVSPVFAGGVE
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   71. .......80......... 90.........100....... ..110.........120........
 
   1337..1340.........1350.........1360.........1370.
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Query Sequence  GQINPHLNLWGNVRVQVGDKGYNDTSAMLGVKYTF
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Template Sequence  YAITPEIATRLEYQWT. . . . . . . NGMLSLGVSYRF
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   129130.........140.... .....150......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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