Job Description Q9JMS3 Confidence 98.95% Date Wed Jan 25 15:21:16 GMT 2012 Rank 11 Aligned Residues 136 % Identity 21% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		1177	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		A	P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	G	A	F	G	G	Y	Q	V	N	.	.	.	.	.	.	.	.	.	.	.	P	Y	V	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	P	Y
Template Known Secondary structure					T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	T	T					.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																.	.	.	.	.	.	.	.	30	.	.	.												.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50
		1257	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																			.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		A	Y	.	.	.	.	.	.	.	.	.	.	.	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	.	.	.	.	.	.	.	.	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	Y	.	.	.	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.															S	S	S	.	.	.	.	.	.	.	.	S																		.	.	.		S	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		71	.												.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		1337	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	V	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation
Alig confidence																		.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	.	.	.	.	.	.	.	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure						T	T											.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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