Job Description Q9JMS3 Confidence 6.44% Date Wed Jan 25 15:21:16 GMT 2012 Rank 60 Aligned Residues 130 % Identity 9% Template c3fidA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein (lpxr); PDBTitle: lpxr from salmonella typhimurium Resolution 1.90 Å

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		1241	.	.	.	.	.	.	.	.	1250	.	.	.								.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.		.	.	.	.	.	.	.	.	1280	.	.															.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	Q	A	Q	L	V	W	M	G	V	K	A	.	.	.	.	.	.	.	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	.	V	H	T	R	L	G	V	K	T	W	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P
Query Conservation															.	.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	G	Y	T	A	K	G	M	V	S	L	T	P	A	I	D	I	L	G	V	N	V	G	F	Y	P	E	V	S	A	V	G	G	N	L	F	Q	Y	L	G	Y	G	A	T	V	A	L	G	N	D	K	T	F	N	S	D	N	G	F	G	L	L	S	R	R	G	L	I	H	T	Q	K	E	G	L	I	Y	K	V
Template Known Secondary structure																				T	T															S	S														S						T					G	G	G			T	T								S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		1299	1300	.	.	.	.	.	.	.	.	.	1310				.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.			.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure														.	.	.																																											.	.
Query SS confidence														.	.	.																																											.	.
Query Sequence		F	V	E	V	N	W	L	H	N	T	R	D	.	.	.	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	.	.	V	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation														.	.	.																																											.	.
Alig confidence														.	.	.																														.													.	.
Template Conservation																																														.
Template Sequence		F	A	G	V	E	R	R	E	V	D	K	N	Y	T	L	Q	G	K	T	L	Q	T	K	M	E	T	V	D	I	N	K	T	V	D	E	Y	R	V	G	A	T	I	G	Y	.	S	P	V	A	F	S	L	S	L	N	K	V	T	S	E	F	R	T	G	D	D	Y	S	Y	I	N	G	D	I	T	F	F	F
Template Known Secondary structure																		S		B	T	T	T							B		S														.	T	T													S	B	T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions