Job Description Q9JMS3 Confidence 13.60% Date Wed Jan 25 15:21:16 GMT 2012 Rank 48 Aligned Residues 111 % Identity 17% Template c3fbyC_ PDB info PDB header:cell adhesion Chain: C: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein. Resolution 3.15 Å

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		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	G	F	I	F	G	Y	Q	D	S	S	S	F	Y	V	V	M	W	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	M	E	Q	T	Y	W	Q	A	N	P	F	R	A	V	A	E	P	G	I	Q	L	K	A	V	K	S	S	T	G	P	G	E	Q	L	R	N	A	L	W	H	T	G	D	T	E	S	Q
Template Known Secondary structure												T	T								.	.	.	.	.	.	.	.	.	.	.	.		S	S					S				S	S						S	S									S	S		T	T									S	S	S		B	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.													.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
										1226	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240			.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	.	.	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R
Query Conservation		.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.																																.	.
Template Conservation																																																										.	.
Template Sequence		V	R	L	L	W	K	D	P	R	N	V	G	W	K	D	K	K	S	Y	R	W	F	L	Q	H	R	P	Q	V	G	Y	I	R	V	R	F	Y	E	G	P	E	L	V	A	D	S	N	V	V	L	D	T	T	M	R	G	.	.	G	R	L	G	V	F	C	F	S	Q	E	N	I	I	W	A	N	L	R	Y	R
Template Known Secondary structure									T	T						T	T											T	T	T	T									T	T													S		S	S	.	.									S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.			720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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