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Job DescriptionQ9JMS3
Confidence2.90%DateWed Jan 25 15:21:16 GMT 2012
Rank93Aligned Residues268
% Identity11%Templatec3efmA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis
Resolution2.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1085....1090.........1100.........1110.........1120.........1130.........1140.........1150.........1160....
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Query Sequence  PKATSMWMRHEGGHNRWRDGSGQLKTQSNRYVIQLGGDIAQWDWGGTNRWHLGVMAGYGNNHSSTGAVRTGYHSKGSVNG
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Template Sequence  TNDWKLRAAYSHTDGRYLMKHVFSNYDGNLDRDDIHFSLSAPFEAFGLRHEVALGWMSIDNHSDIQRYAMTLSPADDVRT
Template Known Secondary structure  TTS


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   277..280.........290.........300.........310.........320.........330.........340.........350......
 
   1165....1170.........1180.........1190.........1200.........1210.........1220.........1230.........1240....
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Query Sequence  YSTGLYATWYADDETHNGAYLDTWAQYGWFDNHVKGDGLPGESWKSKGLTASLETGYAWKIGEFSSNYGNLNEWYVQPQA
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Template Sequence  KQTGAYLVGRFA. . LAEPLHLIVGDRWSDWKTKQMYFGSRREYRIKNQFTPYAGLTYDINDT. . . . . . . . . . . . . YTAYA
Template Known Secondary structure  ..TTTT
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   374.....380..... ....390.........400.........410.........420.........430... .....
 
   1245....1250.........1260.........1270.........1280.........1290.........1300.........1310.........1320....
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Query Sequence  QLVWMGVKADELYESNGTLIESTGDGNVHTRLGVKTWIKRLNKMDDGKSREFSPFVEVNWLHNTRDFGVRMNGEPVYQDG
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Template Sequence  SYTEIFQPQNARDTSGGI. . . LPPIKSKSYELGLKAAYLE. GRLNTSAALFQTRQDNLAQVIPGSSIPGFPNMQASRAAS
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B
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GG.GTS
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   439440.........450...... ...460.........470..... ....480.........490.........500.........510....
 
   1325....1330.........1340.........1350...... ...1360.........1370.
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Query Sequence  TRNIGEVKTGVEGQINPHLNLWGNVRVQVGDK. . . . . . . . GYNDTSAMLGVKYTF
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Template Sequence  GAKVEGIDLEASGQILPDWNIGASYTHFTTKDASGNPINTNHPRSLFKLYTTYRL
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   515....520.........530.........540.........550.........560.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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