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Job DescriptionQ9JMS3
Confidence34.48%DateWed Jan 25 15:21:16 GMT 2012
Rank43Aligned Residues227
% Identity13%Templatec3dwoX_
PDB info PDB header:membrane proteinChain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1124.....1130.........1140... ......1150.........1160.........1170.........1180.........1190.........1200..
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Query Sequence  AQWDWGGTNRWHLGVMAGYG. NNHSSTGAVRTGYHSKGSVNGYSTGLYATWYADDETHNGAYLDTWAQYGWFDNHVKGDG
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Template Sequence  LVVPINDRFAFGLSQVVPMGMRSTWDPNWKGRDFAVDTKIETIGLTGSLSFKVND. . . . NFSLGAGVIIQRTSGFVSQNL
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SSS

TTSTTTTT
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   102.......110.........120.........130.........140.........150...... ...160.........170.......
 
   1203 ......1210.........1220.........1230.........1240.........1250.........1260......
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Query Sequence  L. . . . . . . . . . . . . . . . PGESWKSKGLTASLETGYAWKIGEFSSNYGNLNEWYVQPQAQLVWMGVKADELYESNGTLIES
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Template Sequence  DLYASAANSPGMGGIPFPASNSSALMRVKVDNTSPGFFAGA. . . . . . . . . VWKPTDRDTLGFAYHAKIRNKLKGHYNLYD
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TSTTT
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   178.180.........190.........200.........210........ .220.........230.........240........
 
   1267..1270 .........1280.........1290.........1300.........1310....
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Query Sequence  TGDG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NVHTRLGVKTWIKRLNKMDDGKSREFSPFVEVNWLHNTRDFGVR
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Template Sequence  HDGGLTEGAIEGGTPGLAYPGLDLRMGASASARLDIPAYASLDWVHQ. . . . . . . . FNDRLSLGASATWTEWSSFQDLTLK
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STTTTSTT



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   249250.........260.........270.........280.........290..... ....300.........310.........320
 
   1315....1320.... .....1330.........1340.........1350......... 1360.........1370.
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Query Sequence  MNGEPVYQDG. . TRNIGEVKTGVEGQINPHLNLWGNVRVQVGDKGYN. . . . . . . . . . DTSAMLGVKYTF
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Template Sequence  SHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRF
Template Known Secondary structure  TT




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   321........330.........340.........350.........360.........370.........380.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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