Job Description Q9JMS3 Confidence 97.81% Date Wed Jan 25 15:21:16 GMT 2012 Rank 20 Aligned Residues 207 % Identity 16% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		1122	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	Q	W	D	W	G	G	T	N	R	W	H	L	G	V	M	A	G	Y	G	N	N	H	S	S	T	G	A	V	R	T	G	Y	H	S	K	G	S	V	N	G	Y	S	T	G	L	Y	A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D
Query Conservation
Alig confidence																																				.	.	.												.	.
Template Conservation																																				.	.	.												.	.
Template Sequence		I	S	V	R	Y	D	S	P	V	F	A	G	F	S	G	S	V	Q	Y	V	P	R	D	N	A	N	D	V	D	K	Y	K	H	T	.	.	.	K	S	S	R	E	S	Y	H	A	G	L	.	.	K	Y	E	N	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V
Template Known Secondary structure											B	T	T															S	T	T	S	S	S	T	T	.	.	.	S											.	.					T	T																	T	T	S		B			T
Template Predicted Secondary structure																																				.	.	.												.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		1202	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Sequence		N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	.	.	.	.	.	.	.	T	Q	V	A	A	T	A	A
Template Known Secondary structure		T		T	T																			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																S	S	S	T	T	T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.															230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.								.	.	260	.	.	.	.	.
		1282	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.				.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	.	.	.	V	G	D	K	G	Y
Query Conservation																																																																									.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.																												.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Sequence		Y	R	F	G	.	.	.	.	.	.	.	.	.	N	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	N	.	.	.	.	.	.	.	.	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	Q	G	K	G	A	G	K	V
Template Known Secondary structure				B	T	.	.	.	.	.	.	.	.	.	T																T	T				G	G	.	.	.	.	.	.	.	.	G													S	S	S	S													S	S	T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.										270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.									.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		1359	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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