Job Description Q9JMS3 Confidence 7.23% Date Wed Jan 25 15:21:16 GMT 2012 Rank 55 Aligned Residues 124 % Identity 11% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

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		1214	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G	V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	H	Y	L	G	L	L	H	T	L	P	L	G	.	.	.	.	.	.	.	.	.	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	.	.	.	.	.	.	.	E	D	G	A	A	I	S	G	P	V	D	N	R	N	L	N	A	M	L	T	L	R	A	G	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	.	.	.	.	.	.	.	.	.	T	T														.	.	.	.	.	.	.			T	T		T	T																	T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		1294	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.														.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340					.	.	.	.	.	.	.	.	.	1350	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.														.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.														.	.	.
Query Sequence		R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	V	Y	Q	D	G	T	R	N	I	G	E	V	K	T	G	V	E	G	Q	I	N	.	.	.	.	P	H	L	N	L	W	G	N	V	R	V	Q	V	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.														.	.	.
Alig confidence		.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.									.	.	.	.														.	.	.
Template Conservation		.	.	.	.																																														.	.	.
Template Sequence		.	.	.	.	H	A	F	G	I	G	V	Q	K	M	I	G	N	D	A	F	P	V	L	N	G	Y	T	T	P	Y	V	A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	.	.	.	L	R	Y	D	Y	D	F	A	G	L	G	L	P	G	L	N	L	M	T	R	Y	V	Q	G	R	D	I	D
Template Known Secondary structure		.	.	.	.												S	S	S					B	T	T	T		B				T	T			S	S			S		S	T	T						.	.	.								T	T	T	T		T	T
Template Predicted Secondary structure		.	.	.	.																																														.	.	.
Template SS confidence
						259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
					1354	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		R	G	A	G	R	A	D	D	S	E	W	E	R	N	T	D	L	S	Y	V	I
Template Known Secondary structure			S	T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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