Job Description Q9JMS3 Confidence 97.40% Date Wed Jan 25 15:21:16 GMT 2012 Rank 26 Aligned Residues 234 % Identity 12% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		1091	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170
Predicted Secondary structure
Query SS confidence
Query Sequence		W	M	R	H	E	G	G	H	N	R	W	R	D	G	S	G	Q	L	K	T	Q	S	N	R	Y	V	I	Q	L	G	G	D	I	A	Q	W	D	W	G	G	T	N	R	W	H	L	G	V	M	A	G	Y	G	N	N	H	S	S	T	G	A	V	R	T	G	Y	H	S	K	G	S	V	N	G	Y	S	T	G	L	Y
Query Conservation
Alig confidence																																							.	.	.																																	.	.
Template Conservation																																							.	.	.																																	.	.
Template Sequence		W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	.	.	.	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	.	.	W	K	I	A	P	D
Template Known Secondary structure																T	T	T	T				S																.	.	.		S	S																	S	S		T	T									.	.
Template Predicted Secondary structure																																							.	.	.																																	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.
		1171	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	W	Y	A	D	D	E	T	H	N	G	A	Y	L	D	T	W	A	Q	Y	G	W	F	D	N	H	V	K	G	D	G	L	P	G	E	S	W	K	S	K	G	L	T	A	S	L	E	T	G	Y	A	W	K	I	G	E	F	S	S	N	Y	G	N	L	N	E	W	Y	V	Q	P	Q	A	Q	L	V	W	M	G
Query Conservation
Alig confidence								.	.	.	.																													.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation								.	.	.	.																													.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.										.	.	.
Template Sequence		W	D	V	K	L	T	.	.	.	.	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	.	.	.	.	.	.	.	E	T	E	T	G	L	Q	Y	T	F	N	.	.	.	.	.	.	.	.	.	E	T	V	A	L	R	V	N	Y	.	.	.	Y	L	E
Template Known Secondary structure							S	.	.	.	.	S	S														S									S				.	.	.	.	.	.	.											S	.	.	.	.	.	.	.	.	.	S	S	B							.	.	.
Template Predicted Secondary structure								.	.	.	.																													.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.										.	.	.
Template SS confidence
		118	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.	.	.	.	.	.	.	.	160	.	.										.	.	.	.	.	.	.	170	.				.	.	.
		1251	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	A	D	E	L	Y	E	S	N	G	T	L	I	E	S	T	G	D	G	N	V	H	T	R	L	G	V	K	T	W	I	K	R	L	N	K	M	D	D	G	K	S	R	E	F	S	P	F	V	E	V	N	W	L	H	N	T	R	D	F	G	V	R	M	N	G	E	P	V	Y	Q	D	G	T	R	N	I	G	E
Query Conservation
Alig confidence																	.	.	.	.	.											.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																	.	.	.	.	.											.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Sequence		R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	.	.	.	.	.	T	Q	E	I	R	A	Y	L	P	L	.	.	.	.	.	.	.	.	.	T	L	G	N	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	.	.	.	.	.	D	W	Q	D	D	I	E	R	E	G	H	D	F	N	R
Template Known Secondary structure						S	S	T	T			T	T				.	.	.	.	.											.	.	.	.	.	.	.	.	.			T	T																	T	.	.	.	.	.	T	T	T	T			S
Template Predicted Secondary structure																	.	.	.	.	.											.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.										200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		1331	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.					.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		V	K	T	G	V	E	G	Q	I	N	P	H	L	N	L	W	G	N	V	R	V	Q	.	.	.	.	V	G	D	K	G	Y	N	D	T	S	A	M	L	G	V	K	Y	T	F
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.
Template Conservation
Template Sequence		V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure											S	S	S															S	S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions