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Job DescriptionQ9JMS3
Confidence98.73%DateWed Jan 25 15:21:16 GMT 2012
Rank17Aligned Residues161
% Identity12%Templatec2f1tB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1180.........1190.........1200.........1210.........1220.........1230.........1240.........1250.........
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Query Sequence  HNGAYLDTWAQYGWFDNHVKGDGLPGESWKSKGLTASLETGYAWKIGEFSSNYGNLNEWYVQPQAQLVWMGVKADELYES
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Template Sequence  AGEFFMRAGSATVRPTEGGGFSV. . . . . . . TNNTQLGLTFTYMAT. . . . . . . . . . . DNIGVE. . . . LLAATPFRHKIGTR
Template Known Secondary structure  TT







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T
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   3......10.........20..... ....30.........40 ...... ...50.........60
 
   1260.........1270.........1280.........1290.........1300........ .1310.........1320.........1330....
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Query Sequence  NGTLIESTGDGNVHTRLGVKTWIKRLNKMDDGKSREFSPFVEVNWLHNT. . . . . RDFGVRMNGEPVYQDGTRNIGEVKTG
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Template Sequence  ATGDIATVHHLPPTLMAQWYF. . . . . . . . . GDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
Template Known Secondary structure  TT


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   6970.........80......... 90.........100.........110.........120.........130.........
 
   1335....1340.........1350... ......1360.........1370.
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Query Sequence  VEGQINPHLNLWGNVRVQV. . . . . . . . . . . . . . . GDKGYNDTSAMLGVKYTF
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Template Sequence  VDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF
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   140.........150.........160.........170.........180.........190.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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