Return to main results Retrieve Phyre Job Id

Job DescriptionQ9JMS3
Confidence63.07%DateWed Jan 25 15:21:16 GMT 2012
Rank38Aligned Residues137
% Identity9%Templatec2ervA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1206...1210.........1220.........1230.........1240.........1250.........1260.........1270.........1280.....
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  ESWKSKGLTASLETGYAWKIGEFSSNYGNLNEWYVQPQAQLVWMGVKADELYESNGTLIESTGDGNVHTRLGVKTWIKRL
Query Conservation            
 
 
     
             


 


 
     
   
  
  
      
   


 
      
Alig confidence 





















.......



















.............
















.
Template Conservation 
        
            .......     
    
     
   .............        

  

 
 .
Template Sequence  TGQSGMTYRLGLSWDWDKSWWQ. . . . . . . TSTGRLTGYWDAGYTYWEGG. . . . . . . . . . . . . DEGAGKHSLSFAPVFVY.
Template Known Secondary structure 
TTS




.......TT


.............SS
SS.
Template Predicted Secondary structure 









.......





.............





.
Template SS confidence 















































































   10.........20.........30. ........40.........50. ........60........
 
   1286...1290.........1300.........1310.........1320.........1330.........1340.........1350.........1360....
Predicted Secondary structure 






























.
Query SS confidence 














































































.
Query Sequence  NKMDDGKSREFSPFVEVNWLHNTRDFGVRMNGEPVYQDGTRNIGEVKTGVEGQINPHLNLWGNVRVQVGDKGYNDTSAM.
Query Conservation              
       
                       
   
          
        
          .
Alig confidence  ....






















.






...








































.
Template Conservation  ....         
 
 


    
  .      
...
  
 
   

 
        
  
  
 




   


 
Template Sequence  . . . . EFAGDSIKPFIEAGIGVAAFSGT. RVGDQNL. . . GSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIE
Template Known Secondary structure  ....

SSSSS.TT
...S
STTS

TTSSTT


Template Predicted Secondary structure  ....







.






...



















Template SS confidence 















































































   6970.........80.........90. ....... .100.........110.........120.........130.........140
 
   1365....1370.
Predicted Secondary structure  .
Query SS confidence  .






Query Sequence  . LGVKYTF
Query Conservation  . 
 
  
Alig confidence  .






Template Conservation     
 
  
Template Sequence  SYSLFYKI
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 







   141.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions