Job Description P0AD19 Confidence 2.44% Date Thu Jan 5 11:19:42 GMT 2012 Rank 42 Aligned Residues 113 % Identity 16% Template c3am6C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:rhodopsin-2; PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum Resolution 3.20 Å

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		56	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		F	K	G	S	E	V	L	.	.	.	N	D	L	L	Q	P	A	V	V	A	L	A	Y	P	L	Y	E	Q	L	H	Q	I	R	A	R	W	K	S	I	I	T	I	C	F	I	G	S	V	V	A	M	V	T	G	T	S	V	A	L	L	M	G	A	S	P	E	I	A	A	S	I	L	P	K	S	V	T	T	P	I
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		E	T	G	M	I	A	Q	W	I	V	F	A	I	M	A	A	A	A	I	A	F	G	V	A	V	H	F	R	P	L	K	S	A	Y	Y	I	N	I	A	I	C	T	I	A	A	T	A	Y	Y	A	M	A	V	N	Y	Q	D	L	T	M	N	G	E	R	Q	V	V	Y	A	R	Y	I	D	W	V	L	T	T	P	L
Template Known Secondary structure																										G	G	G																											T	T	T	S			B	S	S	S	B	B			T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		A	M	A	V	G	G	S	I	G	G	I	P	A	I	S	.	.	.	.	.	.	.	A	V	C	V	I	F	V	G	I	L	G	A	V	F	G	H	T	L	L	N	A
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	L	D	L	I	V	M	T	K	M	G	G	V	M	I	S	W	V	I	G	A	D	I	F	M	I	V	F	G	I	L	G	A	F	E	D	E	H	K	F	K	W
Template Known Secondary structure								T	T	S																										T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions